Detailed information NTG0328884

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: EHF38_RS10045
• Genome accession: NZ_CP034092
• Coordinates: 2080051..2080752 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594584.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain A52
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2075051..2085752

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EHF38_RS10015 (EHF38_10015)	-	2075358..2075801 (-)	444	WP_001246675.1	SRPBCC family protein	-
EHF38_RS10020 (EHF38_10020)	tadA	2075871..2076374 (-)	504	WP_000033177.1	tRNA adenosine(34) deaminase TadA	-
EHF38_RS10025 (EHF38_10025)	-	2076381..2077505 (-)	1125	WP_000982062.1	enoyl-CoA hydratase/isomerase family protein	-
EHF38_RS10030 (EHF38_10030)	ung	2077502..2078215 (-)	714	WP_001177528.1	uracil-DNA glycosylase	-
EHF38_RS10035 (EHF38_10035)	-	2078266..2078862 (-)	597	WP_000908453.1	6-carboxytetrahydropterin synthase	-
EHF38_RS10040 (EHF38_10040)	gspK	2079092..2080051 (-)	960	WP_000301478.1	type II secretion system minor pseudopilin GspK	-
EHF38_RS10045 (EHF38_10045)	xcpW	2080051..2080752 (-)	702	WP_000594584.1	type II secretion system minor pseudopilin GspJ	Machinery gene
EHF38_RS10050 (EHF38_10050)	xcpV	2080752..2081132 (-)	381	WP_000836915.1	type II secretion system minor pseudopilin GspI	Machinery gene
EHF38_RS10055 (EHF38_10055)	-	2081122..2081676 (-)	555	WP_000841373.1	type II secretion system protein	-
EHF38_RS10060 (EHF38_10060)	-	2081686..2082294 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
EHF38_RS10065 (EHF38_10065)	-	2082332..2083105 (-)	774	WP_000497298.1	TatD family hydrolase	-
EHF38_RS10070 (EHF38_10070)	-	2083123..2083464 (-)	342	WP_001183025.1	PilZ domain-containing protein	-
EHF38_RS10075 (EHF38_10075)	-	2083476..2084456 (-)	981	WP_001075412.1	DNA polymerase III subunit delta'	-
EHF38_RS10080 (EHF38_10080)	kdsB	2084468..2085229 (-)	762	WP_128385772.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26622.59 Da
• Isoelectric Point: 9.5501

>NTDB_id=328884 EHF38_RS10045 WP_000594584.1 2080051..2080752(-) (xcpW) [Acinetobacter baumannii strain A52]
MIKNKYIHIRSIASRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLNQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=328884 EHF38_RS10045 WP_000594584.1 2080051..2080752(-) (xcpW) [Acinetobacter baumannii strain A52]
ATGATAAAAAATAAATATATTCATATCCGAAGCATTGCTTCTCGTCTTGCGGCGCGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAGTTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAATCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.571	100	0.996