Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   FOY95_RS25500 Genome accession   NZ_CP041773
Coordinates   5294201..5294845 (+) Length   214 a.a.
NCBI ID   WP_003090351.1    Uniprot ID   A0A0H2ZC55
Organism   Pseudomonas aeruginosa strain 519119     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 5289201..5299845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOY95_RS25480 (FOY95_25480) - 5289835..5291049 (+) 1215 WP_019726380.1 MFS transporter -
  FOY95_RS25485 (FOY95_25485) - 5291065..5292093 (-) 1029 WP_003097554.1 AraC family transcriptional regulator -
  FOY95_RS25490 (FOY95_25490) pqsH 5292711..5293859 (+) 1149 WP_016562005.1 2-heptyl-3-hydroxy-4(1H)-quinolone synthase -
  FOY95_RS25500 (FOY95_25500) letA 5294201..5294845 (+) 645 WP_003090351.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  FOY95_RS25505 (FOY95_25505) uvrC 5294846..5296672 (+) 1827 WP_003097551.1 excinuclease ABC subunit UvrC -
  FOY95_RS25510 (FOY95_25510) pgsA 5296706..5297266 (+) 561 WP_003090349.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23608.53 Da        Isoelectric Point: 6.1073

>NTDB_id=328798 FOY95_RS25500 WP_003090351.1 5294201..5294845(+) (letA) [Pseudomonas aeruginosa strain 519119]
MIKVLVVDDHDLVRTGITRMLADIEGLQVVGQADCGEDCLKLARELKPDVVLMDVKMPGIGGLEATRKLLRSQPDIKVVV
VTVCEEDPFPTRLMQAGAAGYMTKGAGLEEMVQAIRQVFAGQRYISPQIAQQLALKSFQPQQHDSPFDSLSEREIQIALM
IANCHKVQSISDKLCLSPKTVNTYRYRIFEKLSITSDVELALLAVRHGMVDAAS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=328798 FOY95_RS25500 WP_003090351.1 5294201..5294845(+) (letA) [Pseudomonas aeruginosa strain 519119]
GTGATTAAGGTGCTGGTGGTCGACGACCACGATCTGGTACGCACCGGTATTACCCGCATGCTGGCCGACATCGAAGGCTT
GCAAGTGGTCGGCCAGGCCGACTGCGGTGAAGACTGTCTGAAACTGGCCCGCGAACTGAAGCCGGATGTCGTCCTGATGG
ACGTGAAGATGCCCGGTATCGGCGGCCTGGAGGCAACCCGCAAGCTGCTGCGCAGCCAGCCCGACATCAAGGTCGTGGTA
GTCACCGTCTGCGAAGAGGATCCGTTCCCCACCCGCCTCATGCAGGCCGGCGCCGCCGGCTACATGACCAAGGGCGCGGG
GCTGGAGGAAATGGTCCAGGCGATTCGCCAGGTCTTCGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAACTGG
CGCTGAAGTCCTTCCAGCCGCAGCAGCACGATTCCCCCTTCGATTCGCTGTCCGAGCGCGAGATCCAGATCGCCCTGATG
ATCGCCAACTGCCACAAGGTGCAGAGCATCTCCGACAAGCTGTGCCTGTCGCCGAAGACCGTGAATACCTATCGCTACCG
CATCTTCGAGAAGCTCTCGATCACCAGCGACGTGGAGCTGGCGCTGCTCGCCGTCCGCCACGGCATGGTCGATGCCGCCA
GCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZC55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

54.502

98.598

0.537
  letA Legionella pneumophila strain ERS1305867

54.502

98.598

0.537