Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | EHU52_RS00260 | Genome accession | NZ_CP034071 |
| Coordinates | 58410..58985 (+) | Length | 191 a.a. |
| NCBI ID | WP_124732764.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpbs1 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 53410..63985
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EHU52_RS00235 | uvrD | 54101..56146 (+) | 2046 | WP_205739052.1 | DNA helicase UvrD | - |
| EHU52_RS00240 | flgA | 56143..56799 (+) | 657 | WP_124732761.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| EHU52_RS00245 | - | 56809..57372 (+) | 564 | WP_124732762.1 | UbiX family flavin prenyltransferase | - |
| EHU52_RS00250 | coaD | 57372..57845 (+) | 474 | WP_001169259.1 | pantetheine-phosphate adenylyltransferase | - |
| EHU52_RS00255 | tmk | 57847..58422 (+) | 576 | WP_124732763.1 | dTMP kinase | - |
| EHU52_RS00260 | comFC | 58410..58985 (+) | 576 | WP_124732764.1 | ComF family protein | Machinery gene |
| EHU52_RS00265 | - | 59018..61057 (+) | 2040 | WP_124732765.1 | N-6 DNA methylase | - |
| EHU52_RS00270 | - | 61054..62238 (+) | 1185 | WP_124732766.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21332.90 Da Isoelectric Point: 8.8864
>NTDB_id=328689 EHU52_RS00260 WP_124732764.1 58410..58985(+) (comFC) [Helicobacter pylori strain Hpbs1]
MRCLTCLKLSFKPLCLNCLNDLPLNLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNAPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNAVSYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCLNCLNDLPLNLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNAPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNAVSYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=328689 EHU52_RS00260 WP_124732764.1 58410..58985(+) (comFC) [Helicobacter pylori strain Hpbs1]
ATGCGTTGTTTGACTTGTTTGAAGCTCTCTTTTAAGCCCCTTTGTTTAAATTGCTTGAACGATTTGCCCTTAAATTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCTTTGCTTTCTCAAAAAGCCGGTGCGGAATTTGTGAAAATCTTGCAAGAAAAAGGC
TTGAACGCTCCCCTTTATGGTATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCAATCGCTCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTGACTTGTTTGAAGCTCTCTTTTAAGCCCCTTTGTTTAAATTGCTTGAACGATTTGCCCTTAAATTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCTTTGCTTTCTCAAAAAGCCGGTGCGGAATTTGTGAAAATCTTGCAAGAAAAAGGC
TTGAACGCTCCCCTTTATGGTATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCAATCGCTCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
96.335 |
100 |
0.963 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.598 |
100 |
0.372 |