Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   EG219_RS04940 Genome accession   NZ_CP034037
Coordinates   939604..940182 (+) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus velezensis strain BCSo1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 934604..945182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG219_RS04920 (EG219_04920) - 935105..936397 (-) 1293 WP_007409192.1 globin-coupled sensor protein -
  EG219_RS04925 (EG219_04925) - 936520..938043 (-) 1524 WP_007409191.1 FAD-dependent oxidoreductase -
  EG219_RS04930 (EG219_04930) - 938168..939025 (+) 858 WP_007409190.1 SDR family oxidoreductase -
  EG219_RS04935 (EG219_04935) - 939055..939288 (-) 234 WP_007409189.1 IDEAL domain-containing protein -
  EG219_RS04940 (EG219_04940) comK 939604..940182 (+) 579 WP_003155179.1 competence protein ComK Regulator
  EG219_RS04945 (EG219_04945) - 940328..940696 (+) 369 WP_124693398.1 iron chaperone -
  EG219_RS04950 (EG219_04950) - 940723..941094 (+) 372 WP_007409186.1 iron chaperone -
  EG219_RS04955 (EG219_04955) - 941228..941938 (-) 711 WP_007409183.1 YrpD family protein -
  EG219_RS04960 (EG219_04960) - 942134..942403 (+) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  EG219_RS04965 (EG219_04965) - 942436..942753 (-) 318 WP_003155166.1 YbjQ family protein -
  EG219_RS04970 (EG219_04970) - 942795..944264 (-) 1470 WP_007409182.1 sodium:solute symporter -
  EG219_RS04975 (EG219_04975) - 944261..944461 (-) 201 WP_007409181.1 DUF3311 domain-containing protein -
  EG219_RS04980 (EG219_04980) - 944582..944941 (-) 360 WP_007409180.1 hypothetical protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=328520 EG219_RS04940 WP_003155179.1 939604..940182(+) (comK) [Bacillus velezensis strain BCSo1]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=328520 EG219_RS04940 WP_003155179.1 939604..940182(+) (comK) [Bacillus velezensis strain BCSo1]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCTGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G1BIW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823

Multiple sequence alignment