Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   FNS63_RS19485 Genome accession   NZ_CP041770
Coordinates   3931558..3932718 (+) Length   386 a.a.
NCBI ID   WP_024085124.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain DH8030     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 3926558..3937718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNS63_RS19460 (FNS63_19455) - 3927303..3928490 (+) 1188 WP_003155036.1 putative glycoside hydrolase -
  FNS63_RS19465 (FNS63_19460) - 3928609..3929187 (+) 579 WP_024085122.1 GNAT family N-acetyltransferase -
  FNS63_RS19470 (FNS63_19465) spx 3929366..3929761 (+) 396 WP_003155034.1 transcriptional regulator Spx -
  FNS63_RS19475 (FNS63_19470) - 3929819..3930475 (-) 657 WP_003155033.1 TerC family protein -
  FNS63_RS20400 - 3930658..3930768 (+) 111 Protein_3769 adaptor protein MecA -
  FNS63_RS19480 (FNS63_19475) mecA 3930751..3931407 (+) 657 WP_003155032.1 adaptor protein MecA Regulator
  FNS63_RS19485 (FNS63_19480) coiA 3931558..3932718 (+) 1161 WP_024085124.1 competence protein CoiA family protein Machinery gene
  FNS63_RS19490 (FNS63_19485) pepF 3932946..3934775 (+) 1830 WP_024085125.1 oligoendopeptidase F Regulator
  FNS63_RS20110 - 3934813..3934980 (-) 168 WP_003155026.1 hypothetical protein -
  FNS63_RS19495 (FNS63_19490) spxH 3935266..3936168 (-) 903 WP_024085126.1 protease adaptor protein SpxH -
  FNS63_RS19500 (FNS63_19495) - 3936165..3936563 (-) 399 WP_003155023.1 thiol management oxidoreductase -
  FNS63_RS19505 (FNS63_19500) - 3936792..3937478 (-) 687 WP_024085127.1 lytic transglycosylase domain-containing protein -

Sequence


Protein


Download         Length: 386 a.a.        Molecular weight: 44301.10 Da        Isoelectric Point: 10.1044

>NTDB_id=328511 FNS63_RS19485 WP_024085124.1 3931558..3932718(+) (coiA) [Bacillus amyloliquefaciens strain DH8030]
MFSAVTAGGRLIQLAGSYSKEKAAELRKKRWFCPVCKSELDIKLGREKLPHFAHKKSRLCPGESEPESEYHLEGKRQLFL
WLKTQGCSVSLEPYLTSAGQRPDLTAESGEERLAFEFQCANLSADSLKSRTAGLKNAGYRPVWIIGAKRLKRMAAQFFRL
SAFHWQFFEVNSFSSLMFYCPDVRSFYRLHSITPFYTGYSYAGLTAIPLHKANLKDICHPEGRHSVRLSSWGRAVAGFRN
KGGRFLSEDAGLIRRLFYERHQVAFPFLPSEVFIPVSAGFVFASPVFVWQGHLYLRLAELSKKGAPIRLSGMVHDLRQKI
RHKEIRMRYGSQDSLIGMAVKQYADFLCLQDFLREIENEVYMPSSQQKRPQTAEELRRRDLLFFGE

Nucleotide


Download         Length: 1161 bp        

>NTDB_id=328511 FNS63_RS19485 WP_024085124.1 3931558..3932718(+) (coiA) [Bacillus amyloliquefaciens strain DH8030]
ATGTTCAGTGCAGTGACTGCCGGCGGACGGCTCATTCAGCTGGCCGGAAGCTATTCAAAGGAAAAAGCGGCGGAGCTGAG
AAAGAAACGCTGGTTCTGCCCCGTTTGCAAAAGTGAGCTTGATATCAAACTGGGACGCGAAAAACTGCCGCACTTCGCTC
ATAAAAAAAGCAGGCTGTGTCCCGGGGAATCCGAACCTGAAAGCGAATACCATCTGGAAGGAAAAAGACAGCTTTTTCTC
TGGCTGAAGACACAAGGGTGCAGTGTCAGCCTGGAACCGTATCTGACTTCCGCTGGACAGCGGCCTGACTTGACGGCAGA
AAGCGGAGAAGAAAGGCTGGCTTTTGAATTTCAATGTGCGAACCTTTCGGCGGACTCTTTAAAGAGCCGGACGGCAGGCC
TGAAAAACGCCGGGTACCGGCCGGTCTGGATCATTGGGGCAAAACGGTTAAAACGGATGGCCGCGCAATTTTTCCGGCTT
TCTGCTTTTCACTGGCAGTTCTTTGAAGTCAATTCATTTTCCTCCTTAATGTTTTACTGCCCCGACGTCCGCTCCTTTTA
CAGGCTGCATTCCATCACTCCGTTTTACACCGGCTATTCTTATGCCGGCTTAACCGCAATTCCTCTTCACAAAGCAAACC
TGAAAGACATTTGTCATCCGGAAGGGCGGCACAGCGTCAGACTTTCCTCGTGGGGGCGTGCCGTTGCCGGCTTCCGCAAC
AAAGGCGGGCGGTTTTTATCTGAAGATGCCGGTCTTATCCGGCGTCTTTTTTACGAAAGACATCAGGTTGCATTTCCATT
TCTCCCCTCTGAAGTGTTTATTCCCGTTTCAGCAGGCTTTGTGTTTGCAAGTCCCGTTTTTGTGTGGCAGGGCCATTTAT
ACTTGCGGCTTGCGGAACTTTCTAAAAAAGGCGCGCCGATCCGATTATCCGGCATGGTTCATGATTTACGGCAAAAAATC
AGGCATAAGGAGATCCGGATGCGGTATGGTTCACAAGACAGCCTTATCGGAATGGCGGTAAAACAATATGCTGATTTCTT
ATGCTTGCAGGATTTTTTAAGGGAAATTGAGAATGAAGTATATATGCCCTCATCTCAACAGAAGCGCCCTCAAACGGCAG
AAGAGCTGCGCCGGCGGGACCTGCTCTTTTTTGGGGAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

46.277

97.409

0.451


Multiple sequence alignment