Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   EGH16_RS12320 Genome accession   NZ_CP034032
Coordinates   2082648..2083073 (-) Length   141 a.a.
NCBI ID   WP_165864746.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FQ01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2077648..2088073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGH16_RS12295 (EGH16_12295) thiC 2078692..2080593 (+) 1902 WP_003686973.1 phosphomethylpyrimidine synthase ThiC -
  EGH16_RS14545 (EGH16_12305) - 2081082..2081444 (-) 363 Protein_2109 pilin -
  EGH16_RS14550 (EGH16_12310) - 2081484..2081840 (-) 357 Protein_2110 pilin -
  EGH16_RS12315 (EGH16_12315) - 2081867..2082193 (-) 327 Protein_2111 pilin -
  EGH16_RS14555 - 2082254..2082595 (-) 342 Protein_2112 pilin -
  EGH16_RS12320 (EGH16_12320) pilE 2082648..2083073 (-) 426 WP_165864746.1 pilin Machinery gene
  EGH16_RS14560 - 2083432..2083818 (-) 387 Protein_2114 pilin -
  EGH16_RS13785 - 2083837..2084181 (-) 345 Protein_2115 pilin -
  EGH16_RS12340 (EGH16_12340) - 2084185..2084493 (+) 309 Protein_2116 NAD(P)-dependent oxidoreductase -
  EGH16_RS12345 (EGH16_12345) metG 2084568..2086622 (-) 2055 WP_010951390.1 methionine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15293.13 Da        Isoelectric Point: 7.8467

>NTDB_id=328456 EGH16_RS12320 WP_165864746.1 2082648..2083073(-) (pilE) [Neisseria gonorrhoeae strain FQ01]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNHGIWPKDNASAGVASSPTDIKGKYVKEVEVKNGVVTATMKSDGVNKEI
KDKKLSLWAKREAGSVKWFCGQPVQRADANAKDDAVTAVTDNDKIDTKHLPSTCRDTSSAK

Nucleotide


Download         Length: 426 bp        

>NTDB_id=328456 EGH16_RS12320 WP_165864746.1 2082648..2083073(-) (pilE) [Neisseria gonorrhoeae strain FQ01]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTCAC
CGAGTATTACCTGAATCACGGCATATGGCCGAAAGACAACGCTTCTGCCGGCGTGGCATCCTCCCCCACCGACATCAAAG
GCAAATATGTTAAAGAGGTTGAAGTTAAAAACGGCGTCGTTACCGCCACAATGAAATCAGACGGCGTAAACAAAGAAATC
AAAGACAAAAAACTCTCCCTGTGGGCCAAGCGTGAAGCCGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTCAGCGCGC
CGACGCCAACGCCAAAGACGACGCCGTCACCGCCGTCACCGACAACGACAAAATCGACACCAAGCACCTGCCGTCAACCT
GCCGTGATACGTCATCTGCCAAATAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

72.857

99.291

0.723
  pilE Neisseria gonorrhoeae strain FA1090

71.631

100

0.716

Multiple sequence alignment