Detailed information NTG0328447

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: EGH16_RS09945
• Genome accession: NZ_CP034032
• Coordinates: 1694156..1695016 (+)
• Length: 286 a.a.
• NCBI ID: WP_003689814.1
• Uniprot ID: A0AA44U9R8
• Organism: Neisseria gonorrhoeae strain FQ01
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1689156..1700016

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EGH16_RS09925 (EGH16_09925)	dapD	1689666..1690487 (-)	822	WP_003689804.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	-
EGH16_RS09930 (EGH16_09930)	pgi	1690697..1692340 (-)	1644	WP_003697594.1	glucose-6-phosphate isomerase	-
EGH16_RS09940 (EGH16_09940)	pilG	1692850..1694082 (+)	1233	WP_003689811.1	type 4 pilus assembly protein PilG	Machinery gene
EGH16_RS09945 (EGH16_09945)	pilD	1694156..1695016 (+)	861	WP_003689814.1	prepilin peptidase	Machinery gene
EGH16_RS09950 (EGH16_09950)	coaE	1695013..1695645 (+)	633	WP_003689816.1	dephospho-CoA kinase	-
EGH16_RS09955 (EGH16_09955)	-	1695638..1695847 (+)	210	WP_003696096.1	DNA gyrase inhibitor YacG	-
EGH16_RS09960 (EGH16_09960)	pilF	1695933..1697609 (-)	1677	WP_003689817.1	type IV-A pilus assembly ATPase PilB	Machinery gene
EGH16_RS09975 (EGH16_09975)	-	1697947..1698393 (-)	447	WP_003689818.1	DUF441 domain-containing protein	-
EGH16_RS09980 (EGH16_09980)	-	1698397..1699371 (-)	975	WP_003689819.1	polyprenyl synthetase family protein	-
EGH16_RS09990 (EGH16_09990)	rplU	1699595..1699903 (+)	309	WP_003691838.1	50S ribosomal protein L21	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31332.34 Da
• Isoelectric Point: 8.9561

>NTDB_id=328447 EGH16_RS09945 WP_003689814.1 1694156..1695016(+) (pilD) [Neisseria gonorrhoeae strain FQ01]
MSDLSVLSPFAVPLAAVLGLLVGSFLNVVIYRVPVMMERGWTVFAKEHLNLPLTDDESRTFNLMKPDSCCPKCRVPIRAW
QNIPIVSYLLLRGKCASCQTKISIRYPLIELLTGVLFGLVAWQYGWSWITLGGLILTAFLISLTFIDADTQYLPDSMTLP
LIWLGLIFNLDGGFVPLQSAVLGAVAGYSSLWLLCAVYKLLTGKTGMGNGDFKLIAALGAWLGISALPVLIFVSSLIGLV
AAIVMRVAKGRHFAFGPALTVSGWIIFTANDSVWRAVNWWLTHPVR

Nucleotide

• Length: 861 bp

>NTDB_id=328447 EGH16_RS09945 WP_003689814.1 1694156..1695016(+) (pilD) [Neisseria gonorrhoeae strain FQ01]
ATGTCTGATTTGTCTGTATTGTCGCCGTTTGCCGTGCCTTTGGCAGCAGTTTTGGGGCTGCTGGTCGGCAGCTTCCTGAA
TGTCGTCATTTACCGCGTACCCGTTATGATGGAACGCGGCTGGACGGTATTTGCCAAAGAACATTTAAACCTGCCGCTGA
CCGACGATGAAAGCCGTACCTTCAACCTGATGAAGCCGGATTCCTGCTGTCCCAAATGCCGTGTGCCGATACGCGCGTGG
CAGAACATCCCGATTGTCAGTTACCTGCTCCTGCGCGGCAAATGCGCTTCCTGCCAAACCAAAATCAGCATACGTTATCC
CTTAATCGAGCTGCTGACCGGCGTATTGTTCGGGCTGGTCGCCTGGCAATACGGCTGGTCTTGGATTACGCTGGGCGGTT
TGATACTGACCGCGTTTCTGATTTCCCTGACCTTTATCGATGCGGACACCCAATACCTGCCCGACTCGATGACATTACCC
TTGATCTGGCTGGGGCTGATATTTAATTTGGACGGCGGCTTCGTGCCTTTGCAGTCTGCCGTTTTAGGTGCGGTTGCCGG
CTATAGTTCATTATGGCTCTTATGTGCAGTGTATAAACTGCTCACAGGAAAAACCGGTATGGGCAACGGAGATTTCAAAC
TGATTGCCGCATTGGGCGCGTGGCTCGGCATATCCGCATTGCCCGTGCTGATTTTTGTTTCCTCTCTGATCGGTTTGGTC
GCGGCAATCGTTATGCGCGTCGCCAAGGGGCGGCATTTTGCCTTCGGCCCCGCACTGACAGTTTCGGGCTGGATAATTTT
TACGGCAAACGATTCCGTATGGCGGGCGGTCAACTGGTGGCTGACCCATCCGGTGAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (134-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	100	100	1
pilD	Vibrio cholerae strain A1552	44.792	100	0.451
pilD	Vibrio campbellii strain DS40M4	45.652	96.503	0.441
pilD	Acinetobacter baumannii D1279779	47.727	92.308	0.441
pilD	Acinetobacter nosocomialis M2	47.727	92.308	0.441