Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   EGH16_RS06970 Genome accession   NZ_CP034032
Coordinates   1199010..1199405 (-) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FQ01     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1194010..1204405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGH16_RS06920 (EGH16_06920) - 1194278..1194550 (-) 273 WP_003691603.1 ACT domain-containing protein -
  EGH16_RS06925 (EGH16_06925) - 1194675..1195412 (-) 738 WP_003691604.1 toxin-antitoxin system YwqK family antitoxin -
  EGH16_RS06935 (EGH16_06935) prmB 1195550..1196449 (-) 900 WP_014580280.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  EGH16_RS14395 (EGH16_06940) - 1196593..1197000 (+) 408 WP_010360581.1 hypothetical protein -
  EGH16_RS14400 - 1196934..1197266 (+) 333 WP_196375186.1 hypothetical protein -
  EGH16_RS06950 (EGH16_06950) - 1197406..1197999 (+) 594 WP_165864740.1 IS1595 family transposase -
  EGH16_RS06955 (EGH16_06955) - 1198333..1198659 (+) 327 Protein_1205 hypothetical protein -
  EGH16_RS14820 (EGH16_06965) - 1198929..1199076 (+) 148 Protein_1206 peptidase -
  EGH16_RS06970 (EGH16_06970) comE 1199010..1199405 (-) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  EGH16_RS14405 (EGH16_06975) - 1199507..1199626 (-) 120 Protein_1208 competence protein ComE -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=328440 EGH16_RS06970 WP_003703428.1 1199010..1199405(-) (comE) [Neisseria gonorrhoeae strain FQ01]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=328440 EGH16_RS06970 WP_003703428.1 1199010..1199405(-) (comE) [Neisseria gonorrhoeae strain FQ01]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1

Multiple sequence alignment