Detailed information NTG0328425

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: FNS63_RS07380
• Genome accession: NZ_CP041770
• Coordinates: 1574828..1576090 (-)
• Length: 420 a.a.
• NCBI ID: WP_003152620.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain DH8030
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 1569828..1581090

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FNS63_RS07365 (FNS63_07360)	yihA	1569911..1570498 (-)	588	WP_003152626.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
FNS63_RS07370 (FNS63_07365)	lon	1570495..1572819 (-)	2325	WP_003152624.1	endopeptidase La	-
FNS63_RS07375 (FNS63_07370)	lonB	1573019..1574677 (-)	1659	WP_003152622.1	ATP-dependent protease LonB	-
FNS63_RS07380 (FNS63_07375)	clpX	1574828..1576090 (-)	1263	WP_003152620.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
FNS63_RS07385 (FNS63_07380)	tig	1576362..1577636 (-)	1275	WP_003152618.1	trigger factor	-
FNS63_RS07390 (FNS63_07385)	ddcA	1577853..1578857 (-)	1005	WP_024085662.1	DNA damage checkpoint antagonist DdcA	-
FNS63_RS07395 (FNS63_07390)	leuD	1578976..1579575 (-)	600	WP_007408146.1	3-isopropylmalate dehydratase small subunit	-
FNS63_RS07400 (FNS63_07395)	leuC	1579591..1581009 (-)	1419	WP_003152606.1	3-isopropylmalate dehydratase large subunit	-

Sequence

Protein

• Length: 420 a.a.
• Molecular weight: 46188.97 Da
• Isoelectric Point: 4.5163

>NTDB_id=328425 FNS63_RS07380 WP_003152620.1 1574828..1576090(-) (clpX) [Bacillus amyloliquefaciens strain DH8030]
MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKDVPKPQEIREILNEYVIGQDQ
AKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILL
KLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI
LFICGGAFDGIEQIIKRRLGQKVIGFGSDNKAADLEKEELLSKVLPEDLLRFGLIPEFIGRLPVIASLEQLDETALVEIL
TKPKNALVKQYKKMLELDDVELEFEGEALSEIAKKAIERKTGARGLRSIIEGIMLDVMFDLPSRDDIEKCVITGATVADG
EAPRLVLKDGTVVGQDKTSA

Nucleotide

• Length: 1263 bp

>NTDB_id=328425 FNS63_RS07380 WP_003152620.1 1574828..1576090(-) (clpX) [Bacillus amyloliquefaciens strain DH8030]
ATGTTTAAATTCAACGAGGAAAAAGGACAATTGAAATGCTCGTTCTGCGGAAAAACGCAAGATCAGGTTCGTAAGCTGGT
TGCAGGACCGGGTGTATATATATGCGACGAATGTATTGAGCTCTGTACAGAAATCGTAGAGGAAGAGCTTGGTACGGAAG
AAGAAGTCGAATTTAAAGACGTTCCGAAGCCGCAGGAAATCCGTGAGATTCTGAATGAATATGTCATCGGACAGGATCAG
GCGAAGAAATCACTTGCGGTTGCGGTATACAACCATTACAAACGCATCAATTCCAACAGTAAAGTGGATGATGTTGAGCT
TTCTAAAAGTAATATTTCTTTAATCGGACCGACTGGAAGCGGGAAAACACTTCTTGCCCAGACGCTTGCGCGTATTCTGA
ACGTTCCGTTTGCGATCGCGGACGCTACATCTCTGACTGAAGCCGGATATGTCGGTGAGGACGTAGAAAACATCCTCCTA
AAGCTGATTCAGGCAGCAGACTATGATGTGGAAAAAGCAGAAAAAGGCATTATCTATATCGATGAAATCGATAAAGTAGC
GCGAAAATCTGAAAACCCGTCCATTACACGCGATGTATCAGGCGAAGGCGTTCAGCAGGCGCTGCTGAAAATTCTTGAAG
GAACGGTTGCAAGCGTGCCGCCTCAAGGAGGACGCAAACATCCTCATCAGGAATTCATCCAGATCGATACGACGAACATT
CTGTTCATTTGCGGCGGTGCATTTGACGGCATCGAACAAATCATCAAACGCCGTCTCGGACAAAAAGTCATCGGCTTCGG
CTCTGATAATAAAGCGGCAGACCTGGAAAAAGAAGAACTGCTTTCTAAAGTTCTTCCGGAAGACCTGCTCCGTTTCGGTC
TGATTCCTGAATTCATCGGCCGTCTTCCTGTCATTGCAAGCCTTGAGCAGCTTGACGAAACGGCACTGGTTGAAATTCTG
ACTAAACCGAAAAACGCACTCGTCAAACAATACAAGAAAATGTTAGAACTTGATGATGTCGAGCTTGAATTTGAAGGCGA
GGCATTATCTGAAATTGCGAAAAAAGCGATCGAGCGTAAAACAGGCGCACGCGGCCTGCGTTCTATCATTGAAGGCATCA
TGCTTGACGTCATGTTTGATCTGCCGTCCCGCGATGATATTGAAAAATGTGTCATTACCGGAGCGACAGTCGCAGACGGT
GAAGCGCCGCGTCTTGTATTAAAAGACGGCACTGTTGTCGGCCAAGATAAAACATCAGCATAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (311-389)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

• AAA domain (Cdc48 subfamily) (AAA_2) (109-305)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	68.262	94.524	0.645
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	59.158	96.19	0.569