Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   EGH18_RS14530 Genome accession   NZ_CP034028
Coordinates   2080210..2080644 (-) Length   144 a.a.
NCBI ID   WP_071200759.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FQ04     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2075210..2085644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGH18_RS12325 (EGH18_12325) - 2075938..2076813 (-) 876 WP_003686971.1 NUDIX domain-containing protein -
  EGH18_RS12340 (EGH18_12340) thiC 2077411..2079312 (+) 1902 WP_047918965.1 phosphomethylpyrimidine synthase ThiC -
  EGH18_RS12350 (EGH18_12350) - 2079801..2080157 (-) 357 Protein_2113 pilin -
  EGH18_RS14530 (EGH18_12355) pilE 2080210..2080644 (-) 435 WP_071200759.1 pilin Machinery gene
  EGH18_RS12360 (EGH18_12360) - 2080696..2081004 (+) 309 Protein_2115 NAD(P)-dependent oxidoreductase -
  EGH18_RS12365 (EGH18_12365) metG 2081079..2083133 (-) 2055 WP_047919415.1 methionine--tRNA ligase -
  EGH18_RS12370 (EGH18_12370) glmS 2083249..2085087 (-) 1839 WP_003697846.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15510.42 Da        Isoelectric Point: 8.9704

>NTDB_id=328366 EGH18_RS14530 WP_071200759.1 2080210..2080644(-) (pilE) [Neisseria gonorrhoeae strain FQ04]
MASASTIKGKYVQKVEVAKGVVTAQMASTGVNKEIKNKKLSLWARREAGSVKWFCGQPVTRDNANAANDDTVTADTDTNG
KIDTKHLPSTCRCFQIGSVKWFCGQPVTRDNAGTDAVTADTTGKDKEIDTKHLPSTCRDKSSAE

Nucleotide


Download         Length: 435 bp        

>NTDB_id=328366 EGH18_RS14530 WP_071200759.1 2080210..2080644(-) (pilE) [Neisseria gonorrhoeae strain FQ04]
GTGGCATCCGCTTCAACAATCAAAGGCAAATATGTTCAGAAAGTTGAAGTCGCAAAAGGCGTCGTCACCGCCCAAATGGC
TTCAACCGGCGTAAACAAAGAAATCAAAAACAAAAAACTCTCCCTGTGGGCCAGGCGTGAAGCCGGTTCGGTAAAATGGT
TCTGCGGACAGCCGGTTACGCGCGACAACGCCAACGCCGCCAACGACGACACCGTCACCGCCGACACCGACACCAACGGC
AAAATCGACACCAAGCACCTGCCGTCAACCTGCCGTTGCTTTCAAATCGGTTCGGTAAAATGGTTCTGCGGACAGCCGGT
TACGCGCGACAACGCCGGCACCGACGCCGTCACCGCCGACACCACCGGCAAAGACAAAGAAATCGACACCAAGCACCTGC
CGTCAACCTGCCGCGATAAATCATCTGCCGAATAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(2-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

79.348

63.889

0.507
  pilE Neisseria gonorrhoeae MS11

72.093

59.722

0.431

Multiple sequence alignment