Detailed information NTG0328341

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: FO444_RS11055
• Genome accession: NZ_CP041759
• Coordinates: 2164566..2165642 (+)
• Length: 358 a.a.
• NCBI ID: WP_211752533.1
• Uniprot ID: -
• Organism: Lactococcus lactis subsp. lactis strain IMAU11823
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2159566..2170642

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FO444_RS11030 (FO444_10990)	pgsA	2159674..2160246 (-)	573	WP_211752532.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
FO444_RS11035 (FO444_10995)	-	2160287..2161183 (-)	897	WP_017865077.1	RodZ family helix-turn-helix domain-containing protein	-
FO444_RS11040 (FO444_11000)	-	2161447..2162730 (-)	1284	WP_017865078.1	pitrilysin family protein	-
FO444_RS11045 (FO444_11005)	-	2162720..2164006 (-)	1287	WP_017865079.1	pitrilysin family protein	-
FO444_RS11050 (FO444_11010)	yaaA	2164204..2164566 (+)	363	WP_012898492.1	S4 domain-containing protein YaaA	-
FO444_RS11055 (FO444_11015)	recF	2164566..2165642 (+)	1077	WP_211752533.1	DNA replication/repair protein RecF	Machinery gene
FO444_RS11060 (FO444_11020)	-	2165729..2166097 (-)	369	WP_058211133.1	carboxymuconolactone decarboxylase family protein	-
FO444_RS11065 (FO444_11025)	-	2166175..2166552 (+)	378	WP_017865081.1	MerR family transcriptional regulator	-
FO444_RS11070 (FO444_11030)	-	2166565..2167512 (-)	948	WP_026138958.1	alpha/beta hydrolase	-
FO444_RS11075 (FO444_11035)	galE	2167636..2168616 (-)	981	WP_017865083.1	UDP-glucose 4-epimerase GalE	-

Sequence

Protein

• Length: 358 a.a.
• Molecular weight: 41342.20 Da
• Isoelectric Point: 6.8652

>NTDB_id=328341 FO444_RS11055 WP_211752533.1 2164566..2165642(+) (recF) [Lactococcus lactis subsp. lactis strain IMAU11823]
MKLKAIELKNFRNYEELKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKELISWSQQEMKVSGVVEKAHAT
VPLEVQLSPKGRIAKANHLKENRLADYVGQLKILMFAPENLELVKGSPATRRKFMDIELGQIHAVYLYDSMRYNRALKER
NAYLKFDKDKIDKNFLSVLDGQLAEHGNKIMLERQNFIDKLEVHAKKIHEQLTHGKENLKIIYNQNVKTDFSKELLSRQD
HDIFRHQTSVGPHRDDLQFFINEINVADFGSQGQQRTVALSIKLAEIDLIFEETGEYPILLLDDVMSELDNHRQLDLIET
SLGKTQTFITTTTLDHLKNLPENLSIFHVNAGTIEQEQ

Nucleotide

• Length: 1077 bp

>NTDB_id=328341 FO444_RS11055 WP_211752533.1 2164566..2165642(+) (recF) [Lactococcus lactis subsp. lactis strain IMAU11823]
ATGAAACTCAAAGCAATTGAACTCAAAAATTTTCGTAATTATGAGGAATTAAAACTTGATTTTCATCCTAATCTCAATAT
TTTTTTAGGACAAAATGCTCAAGGGAAAACAAATATTCTTGAAGCGATTCATTTTTTAGCACTCACTCGTAGTCACAGAA
CAAGTCACGACAAAGAGCTCATTTCTTGGTCGCAACAAGAAATGAAGGTCTCAGGAGTCGTTGAAAAAGCTCATGCAACT
GTTCCACTTGAAGTTCAATTAAGTCCCAAAGGGAGAATTGCTAAAGCCAATCATCTCAAAGAAAATCGCTTAGCCGACTA
CGTTGGTCAACTAAAAATCTTGATGTTTGCACCTGAAAATTTGGAATTGGTCAAAGGTTCTCCTGCTACCCGCAGAAAAT
TTATGGATATTGAACTGGGACAAATCCATGCGGTTTACCTTTATGATTCCATGCGATATAATCGTGCATTAAAAGAACGG
AATGCTTACTTAAAATTTGATAAAGACAAAATTGATAAAAATTTTTTAAGTGTTCTTGACGGACAATTAGCTGAACATGG
TAATAAAATCATGCTTGAGCGGCAAAATTTTATTGATAAACTTGAAGTTCATGCAAAAAAAATCCATGAGCAACTTACTC
ATGGTAAAGAAAATTTAAAAATCATTTATAATCAAAATGTGAAAACTGACTTTTCAAAAGAATTATTGAGCAGACAAGAC
CATGATATTTTTAGGCATCAAACATCGGTTGGCCCTCATCGTGACGATTTACAATTTTTTATCAATGAGATTAATGTTGC
TGATTTTGGTAGTCAAGGACAACAACGAACCGTTGCTCTCTCAATTAAATTAGCAGAAATTGATTTAATTTTTGAAGAGA
CTGGAGAGTATCCGATTTTACTTTTAGATGATGTCATGAGTGAATTAGACAATCATCGTCAACTTGATTTGATTGAAACA
AGTTTGGGTAAAACACAAACTTTTATAACTACAACTACTCTTGATCATCTTAAAAATTTACCTGAAAATCTGAGTATTTT
CCATGTTAATGCTGGAACCATTGAACAAGAGCAATAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	55.278	100	0.556
recF	Bacillus subtilis subsp. subtilis str. 168	46.264	97.207	0.45