Detailed information
Bioinformatically predicted
Overview
| Name | recD | Type | Machinery gene |
| Locus tag | EGH18_RS04480 | Genome accession | NZ_CP034028 |
| Coordinates | 767920..769665 (+) | Length | 581 a.a. |
| NCBI ID | WP_003688652.1 | Uniprot ID | A0AA44U7G6 |
| Organism | Neisseria gonorrhoeae strain FQ04 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 732736..807809 | 767920..769665 | within | 0 |
| IS/Tn | 770352..771353 | 767920..769665 | flank | 687 |
Gene organization within MGE regions
Location: 732736..807809
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGH18_RS04260 (EGH18_04260) | - | 732736..733806 (-) | 1071 | WP_003693067.1 | integrase arm-type DNA-binding domain-containing protein | - |
| EGH18_RS04265 (EGH18_04265) | - | 734015..734794 (-) | 780 | WP_003688701.1 | ferredoxin--NADP reductase | - |
| EGH18_RS13780 (EGH18_04280) | - | 735386..735595 (-) | 210 | WP_003688699.1 | hypothetical protein | - |
| EGH18_RS04285 (EGH18_04285) | dinB | 735694..736752 (+) | 1059 | WP_003695315.1 | DNA polymerase IV | - |
| EGH18_RS04290 (EGH18_04290) | rep | 736822..738837 (-) | 2016 | WP_003706226.1 | DNA helicase Rep | - |
| EGH18_RS04295 (EGH18_04295) | aroD | 738857..739621 (-) | 765 | WP_003688696.1 | type I 3-dehydroquinate dehydratase | - |
| EGH18_RS04300 (EGH18_04300) | recA | 739821..740867 (+) | 1047 | WP_003688695.1 | recombinase RecA | Machinery gene |
| EGH18_RS04315 (EGH18_04315) | - | 741520..741855 (-) | 336 | WP_003688693.1 | YbaB/EbfC family nucleoid-associated protein | - |
| EGH18_RS04320 (EGH18_04320) | dnaX | 741936..744059 (-) | 2124 | WP_003695312.1 | DNA polymerase III subunit gamma/tau | - |
| EGH18_RS04325 (EGH18_04325) | mutL | 744154..746130 (-) | 1977 | WP_003688688.1 | DNA mismatch repair endonuclease MutL | - |
| EGH18_RS04330 (EGH18_04330) | - | 746274..746459 (+) | 186 | WP_003688687.1 | DUF3460 family protein | - |
| EGH18_RS04335 (EGH18_04335) | - | 746470..747138 (+) | 669 | WP_003688686.1 | O-methyltransferase | - |
| EGH18_RS04340 (EGH18_04340) | - | 747138..747851 (+) | 714 | WP_050154366.1 | tol-pal system YbgF family protein | - |
| EGH18_RS04345 (EGH18_04345) | purE | 747899..748384 (+) | 486 | WP_003688684.1 | 5-(carboxyamino)imidazole ribonucleotide mutase | - |
| EGH18_RS14145 (EGH18_04355) | - | 748596..749407 (-) | 812 | Protein_752 | transposase | - |
| EGH18_RS04365 (EGH18_04365) | - | 749778..750143 (+) | 366 | Protein_753 | transposase | - |
| EGH18_RS04370 (EGH18_04370) | - | 750306..751214 (+) | 909 | WP_003688683.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| EGH18_RS04375 (EGH18_04375) | - | 751370..752026 (-) | 657 | WP_003688682.1 | response regulator transcription factor | - |
| EGH18_RS04380 (EGH18_04380) | - | 752023..753792 (-) | 1770 | WP_003688681.1 | histidine kinase | - |
| EGH18_RS04385 (EGH18_04385) | - | 753999..754613 (+) | 615 | WP_003691204.1 | molybdenum cofactor guanylyltransferase | - |
| EGH18_RS04390 (EGH18_04390) | - | 754776..755393 (+) | 618 | WP_010358100.1 | riboflavin synthase | - |
| EGH18_RS04395 (EGH18_04395) | - | 755401..756264 (+) | 864 | WP_003693081.1 | ATP-binding protein | - |
| EGH18_RS04400 (EGH18_04400) | - | 756277..756711 (-) | 435 | WP_003688677.1 | Spy/CpxP family protein refolding chaperone | - |
| EGH18_RS04405 (EGH18_04405) | rpe | 756857..757540 (+) | 684 | WP_003688675.1 | ribulose-phosphate 3-epimerase | - |
| EGH18_RS04415 (EGH18_04415) | ruvB | 757785..758816 (-) | 1032 | WP_003691202.1 | Holliday junction branch migration DNA helicase RuvB | - |
| EGH18_RS04420 (EGH18_04420) | - | 758898..759206 (-) | 309 | WP_003688671.1 | hypothetical protein | - |
| EGH18_RS04430 (EGH18_04430) | - | 759624..760856 (-) | 1233 | WP_003695301.1 | multifunctional CCA addition/repair protein | - |
| EGH18_RS04435 (EGH18_04435) | - | 760935..762563 (-) | 1629 | WP_010951119.1 | ABC-F family ATPase | - |
| EGH18_RS04440 (EGH18_04440) | - | 762713..763087 (+) | 375 | WP_003688664.1 | arsenate reductase | - |
| EGH18_RS04445 (EGH18_04445) | - | 763136..764674 (+) | 1539 | WP_003695299.1 | SurA N-terminal domain-containing protein | - |
| EGH18_RS04450 (EGH18_04450) | recR | 764741..765358 (+) | 618 | WP_003688660.1 | recombination mediator RecR | - |
| EGH18_RS04455 (EGH18_04455) | - | 765414..765692 (-) | 279 | WP_003688659.1 | hypothetical protein | - |
| EGH18_RS04470 (EGH18_04470) | - | 765918..767165 (+) | 1248 | WP_003691197.1 | lipoprotein-releasing ABC transporter permease subunit | - |
| EGH18_RS04475 (EGH18_04475) | lolD | 767158..767853 (+) | 696 | WP_003688655.1 | lipoprotein-releasing ABC transporter ATP-binding protein LolD | - |
| EGH18_RS04480 (EGH18_04480) | recD | 767920..769665 (+) | 1746 | WP_003688652.1 | exodeoxyribonuclease V subunit alpha | Machinery gene |
| EGH18_RS04485 (EGH18_04485) | - | 769737..770383 (-) | 647 | Protein_773 | class I SAM-dependent methyltransferase | - |
| EGH18_RS04490 (EGH18_04490) | - | 770391..771353 (+) | 963 | WP_124693337.1 | transposase | - |
| EGH18_RS13360 | - | 771486..771941 (-) | 456 | Protein_775 | methyltransferase | - |
| EGH18_RS04500 (EGH18_04500) | lon | 772193..774655 (+) | 2463 | WP_003691187.1 | endopeptidase La | - |
| EGH18_RS04505 (EGH18_04505) | - | 774837..775106 (+) | 270 | WP_003688640.1 | HU family DNA-binding protein | - |
| EGH18_RS04510 (EGH18_04510) | - | 775282..775716 (-) | 435 | WP_003688638.1 | hypothetical protein | - |
| EGH18_RS04515 (EGH18_04515) | - | 775709..777016 (-) | 1308 | WP_003695291.1 | homoserine dehydrogenase | - |
| EGH18_RS04520 (EGH18_04520) | - | 777212..777583 (+) | 372 | WP_003688636.1 | Mth938-like domain-containing protein | - |
| EGH18_RS04525 (EGH18_04525) | - | 777660..779582 (+) | 1923 | WP_003691184.1 | ATP-binding cassette domain-containing protein | - |
| EGH18_RS04530 (EGH18_04530) | - | 779569..779964 (+) | 396 | WP_010358122.1 | hypothetical protein | - |
| EGH18_RS04535 (EGH18_04535) | - | 780055..780567 (+) | 513 | WP_003688633.1 | hypothetical protein | - |
| EGH18_RS04545 (EGH18_04545) | - | 781012..781707 (-) | 696 | WP_041421278.1 | DUF4400 domain-containing protein | - |
| EGH18_RS04550 (EGH18_04550) | traD | 781697..783739 (-) | 2043 | WP_012503640.1 | type IV conjugative transfer system coupling protein TraD | - |
| EGH18_RS04555 (EGH18_04555) | mobH | 783736..786288 (-) | 2553 | WP_012503639.1 | MobH family relaxase | - |
| EGH18_RS04560 (EGH18_04560) | - | 786285..786704 (-) | 420 | WP_003693104.1 | hypothetical protein | - |
| EGH18_RS04565 (EGH18_04565) | - | 787215..787676 (+) | 462 | WP_012503638.1 | lytic transglycosylase domain-containing protein | - |
| EGH18_RS04570 (EGH18_04570) | - | 787646..788167 (+) | 522 | WP_003695285.1 | OmpA family protein | - |
| EGH18_RS04575 (EGH18_04575) | traA | 788223..788519 (+) | 297 | WP_003697092.1 | TraA family conjugative transfer protein | - |
| EGH18_RS04580 (EGH18_04580) | traL | 788541..788822 (+) | 282 | WP_003693110.1 | type IV conjugative transfer system protein TraL | - |
| EGH18_RS04585 (EGH18_04585) | - | 788819..789484 (+) | 666 | WP_003704028.1 | conjugal transfer protein TraE | - |
| EGH18_RS04590 (EGH18_04590) | - | 789486..790220 (+) | 735 | WP_003693114.1 | type-F conjugative transfer system secretin TraK | - |
| EGH18_RS04595 (EGH18_04595) | - | 790222..791535 (+) | 1314 | WP_003697090.1 | TrbI/VirB10 family protein | - |
| EGH18_RS04600 (EGH18_04600) | - | 791545..792264 (+) | 720 | WP_003693119.1 | DsbC family protein | - |
| EGH18_RS04605 (EGH18_04605) | - | 792261..792842 (+) | 582 | WP_017146802.1 | TraV family lipoprotein | - |
| EGH18_RS04610 (EGH18_04610) | traC | 792852..795428 (+) | 2577 | WP_003693122.1 | type IV secretion system protein TraC | - |
| EGH18_RS04615 (EGH18_04615) | - | 795456..796004 (+) | 549 | WP_003695274.1 | hypothetical protein | - |
| EGH18_RS04620 (EGH18_04620) | - | 796004..796549 (+) | 546 | WP_003704029.1 | S26 family signal peptidase | - |
| EGH18_RS04625 (EGH18_04625) | - | 796558..797214 (+) | 657 | WP_003693128.1 | hypothetical protein | - |
| EGH18_RS04630 (EGH18_04630) | - | 797211..798329 (+) | 1119 | WP_003695266.1 | TraU family protein | - |
| EGH18_RS04635 (EGH18_04635) | trbC | 798344..799096 (+) | 753 | WP_003699946.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| EGH18_RS04640 (EGH18_04640) | - | 799093..800337 (+) | 1245 | WP_003695263.1 | hypothetical protein | - |
| EGH18_RS04645 (EGH18_04645) | traN | 800376..801917 (+) | 1542 | WP_226876101.1 | conjugal transfer protein TraN | - |
| EGH18_RS04650 (EGH18_04650) | - | 801904..802329 (+) | 426 | WP_003693140.1 | hypothetical protein | - |
| EGH18_RS04655 (EGH18_04655) | - | 802341..803117 (+) | 777 | WP_012503632.1 | thioredoxin family protein | - |
| EGH18_RS04660 (EGH18_04660) | - | 803289..804800 (+) | 1512 | WP_041421275.1 | conjugal transfer protein TraH | - |
| EGH18_RS04665 (EGH18_04665) | - | 804807..807809 (+) | 3003 | WP_012503630.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
Sequence
Protein
Download Length: 581 a.a. Molecular weight: 63039.83 Da Isoelectric Point: 6.0083
>NTDB_id=328340 EGH18_RS04480 WP_003688652.1 767920..769665(+) (recD) [Neisseria gonorrhoeae strain FQ04]
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALGSMLERVFSQE
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALGSMLERVFSQE
Nucleotide
Download Length: 1746 bp
>NTDB_id=328340 EGH18_RS04480 WP_003688652.1 767920..769665(+) (recD) [Neisseria gonorrhoeae strain FQ04]
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCGGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAATGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGGCAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCGGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAATGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGGCAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recD | Neisseria gonorrhoeae strain FA1090 |
99.828 |
100 |
0.998 |