Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FO444_RS01955 Genome accession   NZ_CP041759
Coordinates   369732..370328 (+) Length   198 a.a.
NCBI ID   WP_003131648.1    Uniprot ID   Q9CIL6
Organism   Lactococcus lactis subsp. lactis strain IMAU11823     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 364732..375328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FO444_RS01940 (FO444_01960) ahpC 365104..365667 (+) 564 WP_003131651.1 alkyl hydroperoxide reductase subunit C -
  FO444_RS01945 (FO444_01965) ahpF 365733..367262 (+) 1530 WP_021722378.1 alkyl hydroperoxide reductase subunit F -
  FO444_RS01950 (FO444_01970) - 367428..369593 (+) 2166 WP_201248513.1 penicillin-binding transpeptidase domain-containing protein -
  FO444_RS01955 (FO444_01975) recR 369732..370328 (+) 597 WP_003131648.1 recombination mediator RecR Machinery gene
  FO444_RS01960 (FO444_01980) - 370445..371494 (+) 1050 WP_058204068.1 D-alanine--D-alanine ligase -
  FO444_RS01965 (FO444_01985) murF 371569..372891 (+) 1323 WP_058204069.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  FO444_RS01970 (FO444_01990) - 373061..374713 (+) 1653 WP_058223355.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21909.22 Da        Isoelectric Point: 4.8226

>NTDB_id=328286 FO444_RS01955 WP_003131648.1 369732..370328(+) (recR) [Lactococcus lactis subsp. lactis strain IMAU11823]
MYYPEPIARLIESFSKLPGIGQKTATRLAFYTIGMEDQDVNEFAKNLLSAKRDLSFCSICGNLTESDPCAICTDPTRDRT
TILVVEESKDVLAMEKIREYRGLYHVLHGTISPMNGISPDEINVKTLITRLMDSEVKEVIIATNATSDGEATAMYLARMI
KPAGIKVTRLARGLAVGSDIEYADEITLSKAVENRLEI

Nucleotide


Download         Length: 597 bp        

>NTDB_id=328286 FO444_RS01955 WP_003131648.1 369732..370328(+) (recR) [Lactococcus lactis subsp. lactis strain IMAU11823]
ATGTATTATCCTGAACCTATTGCTCGCCTGATTGAGTCGTTTTCAAAATTACCAGGGATTGGTCAAAAAACAGCGACTCG
ATTGGCTTTTTATACGATTGGCATGGAAGATCAAGATGTCAATGAATTTGCAAAAAATCTTCTGTCAGCAAAACGGGATT
TGAGTTTTTGCTCGATTTGTGGGAATTTAACAGAAAGTGATCCTTGCGCCATTTGTACCGACCCAACGCGTGATCGAACA
ACTATATTGGTCGTTGAAGAATCTAAAGATGTTCTTGCTATGGAAAAAATTCGGGAATATCGAGGACTTTATCATGTTTT
GCATGGTACGATTAGTCCAATGAATGGGATTTCTCCTGATGAAATTAATGTTAAAACATTGATTACAAGATTAATGGATT
CAGAGGTTAAAGAAGTGATTATCGCAACTAATGCCACTTCTGACGGAGAAGCAACCGCCATGTATCTGGCTCGAATGATT
AAGCCTGCAGGAATTAAAGTGACTCGCTTGGCTCGTGGATTAGCTGTAGGATCTGATATAGAATACGCAGATGAAATTAC
TTTATCAAAAGCGGTAGAGAATCGGTTGGAAATTTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CIL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

78.283

100

0.783
  recR Bacillus subtilis subsp. subtilis str. 168

59.596

100

0.596
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.231

98.485

0.485