Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   EGH14_RS12620 Genome accession   NZ_CP034024
Coordinates   2123316..2123633 (-) Length   105 a.a.
NCBI ID   WP_003697861.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FQ35     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2118316..2128633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGH14_RS12560 (EGH14_12560) - 2118712..2119086 (-) 375 Protein_2145 pilin -
  EGH14_RS14410 (EGH14_12575) - 2119638..2120003 (-) 366 Protein_2146 pilin -
  EGH14_RS12580 (EGH14_12580) - 2120043..2120444 (-) 402 Protein_2147 pilin -
  EGH14_RS12590 (EGH14_12590) - 2120751..2121200 (-) 450 Protein_2148 pilin -
  EGH14_RS12595 (EGH14_12595) - 2121294..2121676 (-) 383 Protein_2149 pilin -
  EGH14_RS12600 (EGH14_12600) - 2121667..2122077 (-) 411 Protein_2150 pilin -
  EGH14_RS14415 (EGH14_12610) - 2122604..2122978 (-) 375 Protein_2151 pilin -
  EGH14_RS14420 (EGH14_12615) - 2123018..2123377 (-) 360 Protein_2152 pilin -
  EGH14_RS12620 (EGH14_12620) pilE 2123316..2123633 (-) 318 WP_003697861.1 pilin Machinery gene
  EGH14_RS13695 - 2124006..2124137 (-) 132 WP_010356054.1 hypothetical protein -
  EGH14_RS12635 (EGH14_12635) - 2124219..2124908 (-) 690 WP_003692339.1 M48 family metallopeptidase -
  EGH14_RS12640 (EGH14_12640) - 2124905..2125648 (-) 744 WP_003687014.1 lysophospholipid acyltransferase family protein -
  EGH14_RS12645 (EGH14_12645) gmhB 2125677..2126240 (-) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  EGH14_RS12650 (EGH14_12650) - 2126383..2128035 (+) 1653 WP_003690371.1 LTA synthase family protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11639.16 Da        Isoelectric Point: 10.3830

>NTDB_id=328263 EGH14_RS12620 WP_003697861.1 2123316..2123633(-) (pilE) [Neisseria gonorrhoeae strain FQ35]
MASTGVNKEIKGKKLSLWAKRQDGSVKWFCGQPVKRESNNADAVTADGTDGANGTKIETKHLPSTCRDESSAGCIETPRA
DFKHFQKISRYRILPESRQMAGKQR

Nucleotide


Download         Length: 318 bp        

>NTDB_id=328263 EGH14_RS12620 WP_003697861.1 2123316..2123633(-) (pilE) [Neisseria gonorrhoeae strain FQ35]
ATGGCTTCAACCGGCGTAAACAAAGAAATCAAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAA
ATGGTTCTGCGGACAGCCGGTTAAGCGCGAAAGCAACAACGCCGACGCCGTCACCGCCGACGGCACCGACGGCGCCAACG
GCACCAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATGAATCATCTGCCGGTTGCATAGAAACACCACGCGCC
GATTTCAAACACTTCCAAAAAATCAGCCGTTACCGAATATTACCTGAATCACGGCAAATGGCCGGAAAACAACGGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(2-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

73.611

68.571

0.505
  pilE Neisseria gonorrhoeae MS11

60.563

67.619

0.41

Multiple sequence alignment