Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   EGH13_RS12610 Genome accession   NZ_CP034022
Coordinates   2109358..2109789 (-) Length   143 a.a.
NCBI ID   WP_050170900.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FQ36     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2104358..2114789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGH13_RS12580 (EGH13_12580) msrAB 2104787..2106355 (-) 1569 WP_003687002.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  EGH13_RS12590 (EGH13_12590) pilA 2106501..2107754 (+) 1254 WP_003696286.1 signal recognition particle-docking protein FtsY Machinery gene
  EGH13_RS13695 - 2107832..2108005 (-) 174 WP_165865280.1 hypothetical protein -
  EGH13_RS12595 (EGH13_12595) - 2108019..2108813 (-) 795 WP_124693381.1 opacity family porin -
  EGH13_RS12610 (EGH13_12610) pilE 2109358..2109789 (-) 432 WP_050170900.1 pilin Machinery gene
  EGH13_RS12620 (EGH13_12620) lpxC 2109896..2110819 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  EGH13_RS12630 (EGH13_12630) - 2111204..2111410 (-) 207 Protein_2137 hypothetical protein -
  EGH13_RS12635 (EGH13_12635) - 2111407..2112150 (-) 744 WP_003687014.1 lysophospholipid acyltransferase family protein -
  EGH13_RS12640 (EGH13_12640) gmhB 2112180..2112743 (-) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  EGH13_RS12645 (EGH13_12645) - 2112886..2114538 (+) 1653 WP_003690371.1 LTA synthase family protein -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 15472.32 Da        Isoelectric Point: 9.4144

>NTDB_id=328215 EGH13_RS12610 WP_050170900.1 2109358..2109789(-) (pilE) [Neisseria gonorrhoeae strain FQ36]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNNGIWPKDNTSAGVASSSSIKGKYVKEVEVKNGVVTAEMKSDGVNKEIK
GKRLSLWARRENGSVKWFCGQPVKRDAGAKTGADDVKADGKDTDKINTKHLPSTCRDKASDAT

Nucleotide


Download         Length: 432 bp        

>NTDB_id=328215 EGH13_RS12610 WP_050170900.1 2109358..2109789(-) (pilE) [Neisseria gonorrhoeae strain FQ36]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATAACGGCATATGGCCGAAAGACAACACTTCTGCCGGCGTGGCATCTTCTTCATCAATCAAAGGCA
AATATGTTAAAGAGGTTGAAGTTAAAAACGGCGTCGTTACCGCCGAAATGAAATCAGACGGCGTAAACAAAGAAATCAAA
GGCAAAAGACTCTCCCTGTGGGCCAGGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCGACGC
CGGCGCCAAAACCGGCGCCGACGACGTCAAAGCCGACGGCAAAGACACCGACAAAATCAACACCAAGCACCTGCCGTCAA
CCTGCCGCGATAAGGCATCTGATGCCACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

71.528

100

0.72
  pilE Neisseria gonorrhoeae strain FA1090

67.606

99.301

0.671

Multiple sequence alignment