Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   EGH13_RS12480 Genome accession   NZ_CP034022
Coordinates   2086812..2087096 (-) Length   94 a.a.
NCBI ID   WP_276310806.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FQ36     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2081812..2092096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGH13_RS12450 (EGH13_12450) - 2081980..2082921 (-) 942 WP_003686969.1 ABC transporter ATP-binding protein -
  EGH13_RS12455 (EGH13_12455) - 2082930..2083805 (-) 876 WP_003686971.1 NUDIX domain-containing protein -
  EGH13_RS12470 (EGH13_12470) thiC 2084403..2086304 (+) 1902 WP_047918447.1 phosphomethylpyrimidine synthase ThiC -
  EGH13_RS12480 (EGH13_12480) pilE 2086812..2087096 (-) 285 WP_276310806.1 pilin Machinery gene
  EGH13_RS12485 (EGH13_12485) - 2087153..2087491 (-) 339 Protein_2113 pilin -
  EGH13_RS12490 (EGH13_12490) - 2087537..2087932 (-) 396 Protein_2114 pilin -
  EGH13_RS13690 (EGH13_12495) - 2088396..2088716 (-) 321 Protein_2115 pilin -
  EGH13_RS12500 (EGH13_12500) - 2088720..2089028 (+) 309 Protein_2116 NAD(P)-dependent oxidoreductase -
  EGH13_RS12505 (EGH13_12505) metG 2089103..2091157 (-) 2055 WP_041421453.1 methionine--tRNA ligase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10257.62 Da        Isoelectric Point: 8.5073

>NTDB_id=328213 EGH13_RS12480 WP_276310806.1 2086812..2087096(-) (pilE) [Neisseria gonorrhoeae strain FQ36]
MASPADKIIGKYVEKVEVAKGVVTATMKSDGVNKEIQGKRLSLWAKREDGSVKWFCGQPVKRDDGKADNDAVADDKNNNG
IDTKHLPSTCRDLP

Nucleotide


Download         Length: 285 bp        

>NTDB_id=328213 EGH13_RS12480 WP_276310806.1 2086812..2087096(-) (pilE) [Neisseria gonorrhoeae strain FQ36]
GTGGCATCCCCCGCCGACAAAATCATAGGCAAATATGTTGAGAAAGTTGAAGTCGCAAAAGGCGTCGTTACCGCCACAAT
GAAATCAGACGGCGTAAACAAAGAAATCCAAGGCAAAAGACTCTCCCTGTGGGCCAAGCGTGAAGACGGTTCGGTAAAAT
GGTTCTGCGGACAGCCGGTTAAGCGCGACGACGGCAAAGCCGACAACGACGCCGTTGCCGACGACAAAAACAACAACGGC
ATCGACACCAAGCACCTGCCGTCAACCTGCCGTGACCTGCCGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(10-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

72.222

95.745

0.691
  pilE Neisseria gonorrhoeae MS11

68.478

97.872

0.67

Multiple sequence alignment