Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   EGH11_RS12495 Genome accession   NZ_CP034018
Coordinates   2104681..2104980 (-) Length   99 a.a.
NCBI ID   WP_115306942.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FQ82     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2099681..2109980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGH11_RS13650 - 2100287..2100436 (-) 150 WP_153707856.1 hypothetical protein -
  EGH11_RS12445 (EGH11_12445) - 2100450..2101211 (-) 762 Protein_2130 opacity family porin -
  EGH11_RS12455 (EGH11_12455) - 2101670..2102170 (-) 501 Protein_2131 pilin -
  EGH11_RS14520 (EGH11_12475) - 2102985..2103091 (-) 107 Protein_2132 pilin -
  EGH11_RS12485 (EGH11_12485) lpxC 2103219..2104142 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  EGH11_RS12495 (EGH11_12495) pilE 2104681..2104980 (-) 300 WP_115306942.1 pilin Machinery gene
  EGH11_RS12500 (EGH11_12500) - 2105037..2105411 (-) 375 Protein_2135 pilin -
  EGH11_RS12510 (EGH11_12510) - 2105854..2106204 (-) 351 Protein_2136 pilin -
  EGH11_RS12515 (EGH11_12515) - 2106231..2106581 (-) 351 Protein_2137 pilin -
  EGH11_RS14525 (EGH11_12520) - 2106608..2107258 (-) 651 WP_082298951.1 pilin -
  EGH11_RS12525 (EGH11_12525) - 2107374..2107746 (-) 373 Protein_2139 pilin -
  EGH11_RS12535 (EGH11_12535) - 2107881..2108227 (-) 347 Protein_2140 pilin -
  EGH11_RS12540 (EGH11_12540) - 2108248..2108607 (-) 360 Protein_2141 pilin -
  EGH11_RS12555 (EGH11_12555) - 2109406..2109531 (+) 126 Protein_2142 IS110 family transposase -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10618.08 Da        Isoelectric Point: 10.1380

>NTDB_id=328119 EGH11_RS12495 WP_115306942.1 2104681..2104980(-) (pilE) [Neisseria gonorrhoeae strain FQ82]
MASPPSDIKGKYVKSVTVAKGVVTAEMKSDGVNKEIKGKKLSLWARREDGSVKWFCGRPVTRANVADPNDAVAAANDKDK
EIDTKHLPSTCRDTSSAGK

Nucleotide


Download         Length: 300 bp        

>NTDB_id=328119 EGH11_RS12495 WP_115306942.1 2104681..2104980(-) (pilE) [Neisseria gonorrhoeae strain FQ82]
GTGGCATCCCCCCCCTCCGACATCAAAGGCAAATATGTTAAAAGCGTTACGGTCGCAAAAGGCGTCGTTACCGCCGAAAT
GAAATCAGACGGCGTAAACAAAGAAATCAAAGGCAAAAAACTCTCCCTGTGGGCCAGGCGTGAAGACGGTTCGGTAAAAT
GGTTCTGCGGACGGCCGGTTACGCGCGCCAACGTTGCCGACCCCAACGACGCCGTTGCCGCCGCCAACGACAAAGACAAA
GAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGACACTTCATCTGCCGGTAAGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(4-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

71.717

100

0.717
  pilE Neisseria gonorrhoeae strain FA1090

71.739

92.929

0.667

Multiple sequence alignment