Detailed information    

insolico Bioinformatically predicted

Overview


Name   dsbA1   Type   Machinery gene
Locus tag   EGH11_RS10310 Genome accession   NZ_CP034018
Coordinates   1744978..1745676 (-) Length   232 a.a.
NCBI ID   WP_003689902.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FQ82     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1739978..1750676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGH11_RS10295 (EGH11_10295) - 1740339..1741340 (-) 1002 WP_004467106.1 peptidylprolyl isomerase -
  EGH11_RS10300 (EGH11_10300) - 1741442..1743847 (-) 2406 WP_050164141.1 LPS-assembly protein LptD -
  EGH11_RS10305 (EGH11_10305) amgK 1743917..1744921 (+) 1005 WP_003689901.1 N-acetylmuramate/N-acetylglucosamine kinase AmgK -
  EGH11_RS10310 (EGH11_10310) dsbA1 1744978..1745676 (-) 699 WP_003689902.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  EGH11_RS10315 (EGH11_10315) murJ 1746114..1747652 (+) 1539 WP_050157364.1 murein biosynthesis integral membrane protein MurJ -
  EGH11_RS10320 (EGH11_10320) - 1747785..1748744 (+) 960 WP_047917746.1 alpha/beta fold hydrolase -
  EGH11_RS10325 (EGH11_10325) trpC 1748795..1749577 (+) 783 WP_003689906.1 indole-3-glycerol phosphate synthase TrpC -

Sequence


Protein


Download         Length: 232 a.a.        Molecular weight: 25235.89 Da        Isoelectric Point: 5.6758

>NTDB_id=328111 EGH11_RS10310 WP_003689902.1 1744978..1745676(-) (dsbA1) [Neisseria gonorrhoeae strain FQ82]
MKSRHLALGVAALFALAACDSKVQTSVPADSAPAASAAAAPAGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAR
LEPVLSKHAKSFKDDMYLRTEHVVWQKEMLPLARLAAAVDMAAAESKDVANSHIFDAMVNQKIKLQEPEVLKKWLGEQTA
FDGKKVLAAYESPESQARAGKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKVREEQKAAQ

Nucleotide


Download         Length: 699 bp        

>NTDB_id=328111 EGH11_RS10310 WP_003689902.1 1744978..1745676(-) (dsbA1) [Neisseria gonorrhoeae strain FQ82]
ATGAAATCCAGACACCTCGCCCTCGGCGTTGCCGCCCTGTTCGCCCTTGCCGCGTGCGACAGCAAAGTCCAAACCAGCGT
CCCCGCCGACAGCGCGCCTGCCGCTTCGGCAGCCGCCGCCCCGGCAGGACTGGTCGAAGGGCAAAACTACACCGTCCTTG
CCAACCCGATTCCCCAACAGCAGGCAGGCAAGGTTGAAGTGCTTGAGTTTTTCGGCTATTTTTGTCCGCACTGCGCCCGC
CTCGAACCTGTTTTGAGCAAACACGCCAAGTCTTTTAAAGACGATATGTACCTGCGTACCGAACACGTCGTCTGGCAGAA
AGAAATGCTGCCGCTGGCACGCCTCGCCGCCGCCGTCGATATGGCTGCCGCCGAAAGCAAAGATGTGGCGAACAGCCATA
TTTTCGATGCGATGGTCAACCAAAAAATCAAGCTGCAAGAGCCGGAAGTCCTCAAAAAATGGCTGGGCGAACAAACCGCC
TTTGACGGCAAAAAAGTCCTTGCCGCCTACGAATCCCCCGAAAGTCAGGCGCGCGCCGGCAAAATGCAGGAGCTGACCGA
AACCTTCCAAATCGACGGTACGCCCACGGTTATCGTCGGCGGCAAATATAAAGTTGAATTTGCCGACTGGGAGTCCGGTA
TGAACACCATCGACCTTTTGGCGGACAAAGTACGTGAAGAACAAAAAGCCGCGCAGTAG

Domains


Predicted by InterproScan.

(63-212)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

97.845

100

0.978

  dsbA2 Neisseria meningitidis MC58

76.19

81.466

0.621


Multiple sequence alignment