Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   FGF55_RS13745 Genome accession   NZ_CP041691
Coordinates   2789237..2791009 (-) Length   590 a.a.
NCBI ID   WP_017418307.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ZJU1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2784237..2796009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGF55_RS13720 (FGF55_13720) sdhA 2784449..2786209 (-) 1761 WP_003152573.1 succinate dehydrogenase flavoprotein subunit -
  FGF55_RS13725 (FGF55_13725) sdhC 2786243..2786851 (-) 609 WP_003152571.1 succinate dehydrogenase cytochrome B558 -
  FGF55_RS13730 (FGF55_13730) - 2787148..2787594 (+) 447 WP_007612940.1 YslB family protein -
  FGF55_RS13735 (FGF55_13735) - 2787641..2788870 (-) 1230 WP_014418576.1 aspartate kinase -
  FGF55_RS13745 (FGF55_13745) uvrC 2789237..2791009 (-) 1773 WP_017418307.1 excinuclease ABC subunit UvrC Machinery gene
  FGF55_RS13750 (FGF55_13750) trxA 2791152..2791466 (-) 315 WP_003152560.1 thioredoxin -
  FGF55_RS13755 (FGF55_13755) - 2791620..2793110 (-) 1491 WP_014418579.1 alpha-N-arabinofuranosidase -
  FGF55_RS13760 (FGF55_13760) - 2793324..2794301 (-) 978 WP_014418580.1 electron transfer flavoprotein subunit alpha/FixB family protein -
  FGF55_RS13765 (FGF55_13765) - 2794333..2795106 (-) 774 WP_007408121.1 electron transfer flavoprotein subunit beta/FixA family protein -
  FGF55_RS13770 (FGF55_13770) - 2795120..2795899 (-) 780 WP_014418582.1 enoyl-CoA hydratase -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 68370.31 Da        Isoelectric Point: 9.6173

>NTDB_id=328082 FGF55_RS13745 WP_017418307.1 2789237..2791009(-) (uvrC) [Bacillus amyloliquefaciens strain ZJU1]
MNKQLKEKLALLPDQPGCYLMKDRQKTVIYVGKAKVLKNRVRSYFTGSHDAKTQRLVTEIEDFEYIVTSSNLEALILEMN
LIKKYDPKYNVMLKDDKTYPFIKITHERHPRLIVTRNVKKDKGRYFGPYPNVQAARETKKLLDRLYPLRKCSKLPDRVCL
YYHLGQCLAPCVKDISEETNREIVEDITRFLKGGHNEIKKELEAKMAEAAEKLEFERAKEFRDQLVHIESTMEKQKMTMN
DLLDRDVFAYAYDKGWMCVQVFFIRQGKLIERDVSMFPMYQEADEEFLTFIGQFYSKNNHFLPKEILVPDSVDRDMISEL
LETAVHQPKKGPKKELLLLAHKNAKIALREKFSLIERDEERSIGAAERLGEALNIYTPHRIEAFDNSNIQGTNPVSAMIV
FIDGKPNKKEYRKYKIKTVTGPDDYGSMREVVRRRYTRVLRENLPLPDLIIIDGGKGQINAARDVLENELGLDVPVAGLA
KDDKHRTSNLLIGDPLEPVFLERNSQEFYLLQRIQDEVHRFAISFHRQIRGKSVFQSVLDDIPGIGEKRKKMLLKHFGSV
KKMKEASLDDIKKAGVPAAAAQLLFEKLKK

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=328082 FGF55_RS13745 WP_017418307.1 2789237..2791009(-) (uvrC) [Bacillus amyloliquefaciens strain ZJU1]
ATGAATAAACAACTGAAAGAAAAGCTGGCCCTCCTTCCCGATCAGCCGGGCTGTTATTTAATGAAAGACCGTCAAAAAAC
AGTCATCTACGTGGGGAAAGCGAAAGTCTTGAAAAACAGGGTGCGATCTTATTTCACCGGTTCTCACGACGCAAAAACCC
AACGGCTTGTGACGGAGATTGAGGACTTTGAATATATCGTGACTTCCTCCAATCTTGAAGCGCTTATTTTGGAAATGAAT
CTGATTAAAAAATACGATCCGAAATACAATGTCATGCTGAAAGATGATAAAACCTATCCCTTTATTAAAATCACCCATGA
ACGCCATCCGCGGCTGATTGTCACCCGGAATGTCAAAAAAGACAAAGGACGCTATTTCGGCCCGTATCCGAATGTGCAGG
CGGCGCGGGAAACGAAAAAACTGTTGGACCGCCTTTACCCGCTCAGGAAATGCTCAAAGCTTCCGGACCGCGTCTGTCTT
TATTATCATCTCGGACAATGCCTCGCCCCATGTGTAAAGGATATATCTGAGGAGACAAACCGCGAGATTGTTGAAGACAT
CACCCGTTTTTTAAAGGGAGGGCATAACGAAATCAAAAAAGAGCTCGAAGCGAAAATGGCAGAAGCGGCGGAAAAGCTTG
AATTTGAACGGGCTAAAGAATTCCGCGACCAGCTTGTTCACATCGAATCGACGATGGAGAAGCAAAAAATGACCATGAAT
GACCTTCTGGACCGCGATGTGTTTGCATATGCCTACGATAAAGGCTGGATGTGCGTCCAAGTCTTTTTCATTCGCCAAGG
AAAACTGATCGAACGCGACGTCAGCATGTTTCCGATGTATCAGGAAGCGGATGAAGAATTCCTGACCTTCATCGGCCAGT
TCTATTCCAAAAACAATCACTTTCTGCCTAAGGAAATTCTGGTGCCTGACAGCGTTGACAGGGACATGATCAGCGAGCTG
TTGGAAACCGCCGTGCATCAGCCGAAAAAAGGCCCGAAAAAAGAGCTGCTTTTGCTTGCGCACAAAAATGCGAAAATTGC
TCTGCGGGAAAAATTCTCGTTAATCGAGCGGGATGAGGAACGGTCGATCGGTGCAGCCGAACGGCTCGGCGAAGCGCTGA
ATATTTACACGCCGCATCGGATTGAAGCGTTTGACAACTCCAATATTCAAGGCACAAACCCCGTATCGGCCATGATTGTC
TTTATTGACGGAAAACCGAATAAAAAGGAATACCGCAAATATAAAATTAAAACCGTAACAGGGCCGGATGATTACGGCTC
AATGAGGGAAGTCGTCAGAAGAAGGTACACGAGGGTGCTCCGCGAAAATCTTCCGCTGCCGGATTTAATCATCATTGACG
GCGGAAAAGGGCAGATTAACGCGGCGCGCGACGTGCTCGAGAATGAGCTCGGCCTTGATGTCCCGGTAGCGGGATTGGCG
AAAGATGATAAACACCGAACATCGAACCTTTTGATCGGCGACCCGCTTGAACCGGTGTTTCTGGAGCGGAACAGCCAAGA
GTTTTACCTGCTTCAGCGTATTCAGGACGAAGTTCACCGTTTTGCGATCAGCTTTCACAGACAGATCCGGGGAAAAAGCG
TCTTTCAATCCGTTCTGGATGATATCCCCGGAATCGGCGAAAAACGCAAAAAAATGCTCTTAAAACATTTCGGATCTGTC
AAAAAGATGAAGGAAGCAAGCCTTGACGATATCAAAAAAGCCGGTGTGCCGGCCGCGGCGGCCCAGCTGCTGTTTGAAAA
ATTGAAAAAATAG

Domains

Predicted by InterProScan.

GIY-YIG catalytic domain (GIY-YIG)

(16-90)

UvrB/uvrC motif (UVR)

(198-229)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(373-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

59.694

99.661

0.595
  uvrC Streptococcus pneumoniae R6

59.354

99.661

0.592
  uvrC Streptococcus pneumoniae D39

59.354

99.661

0.592

Multiple sequence alignment