Detailed information NTG0328074

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: FGF55_RS13250
• Genome accession: NZ_CP041691
• Coordinates: 2688647..2689915 (+)
• Length: 422 a.a.
• NCBI ID: WP_032863553.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain ZJU1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2683647..2694915

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FGF55_RS13230 (FGF55_13230)	-	2685018..2685668 (-)	651	WP_007408203.1	tetratricopeptide repeat protein	-
FGF55_RS13235 (FGF55_13235)	mnmA	2685726..2686841 (-)	1116	WP_012118077.1	tRNA 2-thiouridine(34) synthase MnmA	-
FGF55_RS13240 (FGF55_13240)	-	2686878..2688017 (-)	1140	WP_007612815.1	cysteine desulfurase family protein	-
FGF55_RS13245 (FGF55_13245)	cymR	2688036..2688452 (-)	417	WP_003152730.1	cysteine metabolism transcriptional regulator CymR	-
FGF55_RS13250 (FGF55_13250)	rarA	2688647..2689915 (+)	1269	WP_032863553.1	replication-associated recombination protein A	Machinery gene
FGF55_RS13255 (FGF55_13255)	-	2690029..2690793 (-)	765	WP_014418524.1	tRNA threonylcarbamoyladenosine dehydratase	-
FGF55_RS13265 (FGF55_13265)	aspS	2691119..2692897 (-)	1779	WP_007408199.1	aspartate--tRNA ligase	-
FGF55_RS13270 (FGF55_13270)	hisS	2692912..2694186 (-)	1275	WP_014418525.1	histidine--tRNA ligase	-
FGF55_RS20375	-	2694543..2694713 (-)	171	WP_003152722.1	YrzK family protein	-

Sequence

Protein

• Length: 422 a.a.
• Molecular weight: 46643.63 Da
• Isoelectric Point: 9.0119

>NTDB_id=328074 FGF55_RS13250 WP_032863553.1 2688647..2689915(+) (rarA) [Bacillus amyloliquefaciens strain ZJU1]
MKPLAYRMRPANIEDIIGQEHLVKEDKIIGRMVRAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVIHNKKDME
IVVQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPDLIKQALKR
ALTDKHRGLGSYSVSVDDDAMDHFAQGCGGDVRSALNALELAVLSTKESSDGTIRITRETAEECLQKKSYTHDKNGDAHY
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESLSRRLLVIAYEDIGLASPQAGPRVLSAIQTAERIGFPEARIPLANAV
IELCLSPKSNSAITAVDEALKDIRAGKIGDVPKHLKDAHYKGAQELGRGIGYQYPHDFENGWVEQQYLPDPLKNKQYYKP
KQTGKFEAAIKQVYEKLMKQKK

Nucleotide

• Length: 1269 bp

>NTDB_id=328074 FGF55_RS13250 WP_032863553.1 2688647..2689915(+) (rarA) [Bacillus amyloliquefaciens strain ZJU1]
ATGAAACCATTGGCGTATCGGATGCGGCCTGCCAATATCGAAGACATTATCGGCCAGGAACATTTGGTCAAAGAAGATAA
AATCATCGGCAGAATGGTGCGTGCAAAGCACTTATCATCCATGATCCTGTACGGACCGCCGGGCATCGGAAAAACGTCCA
TCGCCACAGCGATCGCAGGATCGACAAGCATCGCATTCAGGAAATTGAATGCCGTCATTCATAATAAAAAAGACATGGAG
ATTGTCGTACAGGAAGCGAAAATGTCAGGCCAGGTCATTTTAATCCTTGACGAAGTGCACAGGCTTGATAAGGGAAAGCA
GGATTTTCTGCTGCCCTATTTAGAAAACGGAATGATTATTTTAATCGGCGCGACGACCGCCAACCCTTATCATGCCATTA
ACCCGGCCATCAGAAGCCGGACCCAGATATTTGAGCTCGAACCGTTAACACCCGATCTGATCAAGCAGGCATTGAAAAGA
GCGCTCACAGATAAACACCGGGGACTCGGTTCCTACAGCGTTTCGGTGGACGACGACGCGATGGATCATTTCGCACAAGG
GTGCGGAGGAGACGTCCGCTCCGCTTTGAACGCACTGGAGCTTGCCGTGCTCTCTACAAAGGAATCAAGCGATGGCACGA
TCCGGATTACACGGGAAACGGCGGAAGAATGTCTGCAGAAAAAAAGCTATACTCATGATAAAAACGGCGATGCGCATTAT
GACGTCTTATCCGCCTTCCAAAAATCAATCCGAGGCTCGGACGCAAACGCCGCCCTTCATTATCTGGCCCGTCTGATCGA
AGCCGGAGACCTTGAAAGCTTATCAAGAAGGCTTCTCGTGATCGCCTATGAAGATATCGGCCTCGCAAGCCCGCAGGCAG
GCCCCCGGGTGCTGAGCGCGATTCAGACCGCAGAACGGATCGGCTTTCCGGAAGCGAGAATTCCGCTGGCCAATGCGGTA
ATCGAATTATGCCTCTCGCCAAAATCAAACTCCGCCATCACAGCCGTTGATGAGGCGCTCAAAGACATCAGGGCGGGTAA
AATCGGCGATGTGCCGAAACATTTAAAAGACGCCCACTATAAAGGGGCCCAAGAGCTCGGACGCGGGATCGGCTATCAAT
ATCCTCACGATTTCGAGAACGGATGGGTCGAACAGCAATATTTGCCCGATCCGTTAAAAAACAAGCAATACTATAAACCG
AAACAAACGGGGAAATTTGAAGCCGCCATAAAGCAAGTGTATGAAAAACTGATGAAGCAGAAAAAATAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (8-125)

• AAA C-terminal domain (AAA_assoc_2) (172-251)

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-417)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	90.736	99.763	0.905