Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   EGH15_RS14525 Genome accession   NZ_CP034016
Coordinates   2080129..2080563 (-) Length   144 a.a.
NCBI ID   WP_071200759.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FQ84     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2075129..2085563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGH15_RS12320 (EGH15_12320) - 2075857..2076732 (-) 876 WP_003686971.1 NUDIX domain-containing protein -
  EGH15_RS12335 (EGH15_12335) thiC 2077330..2079231 (+) 1902 WP_047918965.1 phosphomethylpyrimidine synthase ThiC -
  EGH15_RS12345 (EGH15_12345) - 2079720..2080076 (-) 357 Protein_2111 pilin -
  EGH15_RS14525 (EGH15_12350) pilE 2080129..2080563 (-) 435 WP_071200759.1 pilin Machinery gene
  EGH15_RS12355 (EGH15_12355) - 2080615..2080923 (+) 309 Protein_2113 NAD(P)-dependent oxidoreductase -
  EGH15_RS12360 (EGH15_12360) metG 2080998..2083052 (-) 2055 WP_047919415.1 methionine--tRNA ligase -
  EGH15_RS12365 (EGH15_12365) glmS 2083168..2085006 (-) 1839 WP_003697846.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15510.42 Da        Isoelectric Point: 8.9704

>NTDB_id=328073 EGH15_RS14525 WP_071200759.1 2080129..2080563(-) (pilE) [Neisseria gonorrhoeae strain FQ84]
MASASTIKGKYVQKVEVAKGVVTAQMASTGVNKEIKNKKLSLWARREAGSVKWFCGQPVTRDNANAANDDTVTADTDTNG
KIDTKHLPSTCRCFQIGSVKWFCGQPVTRDNAGTDAVTADTTGKDKEIDTKHLPSTCRDKSSAE

Nucleotide


Download         Length: 435 bp        

>NTDB_id=328073 EGH15_RS14525 WP_071200759.1 2080129..2080563(-) (pilE) [Neisseria gonorrhoeae strain FQ84]
GTGGCATCCGCTTCAACAATCAAAGGCAAATATGTTCAGAAAGTTGAAGTCGCAAAAGGCGTCGTCACCGCCCAAATGGC
TTCAACCGGCGTAAACAAAGAAATCAAAAACAAAAAACTCTCCCTGTGGGCCAGGCGTGAAGCCGGTTCGGTAAAATGGT
TCTGCGGACAGCCGGTTACGCGCGACAACGCCAACGCCGCCAACGACGACACCGTCACCGCCGACACCGACACCAACGGC
AAAATCGACACCAAGCACCTGCCGTCAACCTGCCGTTGCTTTCAAATCGGTTCGGTAAAATGGTTCTGCGGACAGCCGGT
TACGCGCGACAACGCCGGCACCGACGCCGTCACCGCCGACACCACCGGCAAAGACAAAGAAATCGACACCAAGCACCTGC
CGTCAACCTGCCGCGATAAATCATCTGCCGAATAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(2-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

79.348

63.889

0.507
  pilE Neisseria gonorrhoeae MS11

72.093

59.722

0.431

Multiple sequence alignment