Detailed information    

insolico Bioinformatically predicted

Overview

Name   hexB   Type   Machinery gene
Locus tag   FGF55_RS09015 Genome accession   NZ_CP041691
Coordinates   1762131..1764005 (+) Length   624 a.a.
NCBI ID   WP_014417807.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ZJU1     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1757131..1769005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGF55_RS09000 (FGF55_09000) ymcA 1758182..1758613 (+) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  FGF55_RS09005 (FGF55_09005) cotE 1758866..1759411 (+) 546 WP_003154111.1 outer spore coat protein CotE -
  FGF55_RS09010 (FGF55_09010) hexA 1759530..1762115 (+) 2586 WP_032863834.1 DNA mismatch repair protein MutS Machinery gene
  FGF55_RS09015 (FGF55_09015) hexB 1762131..1764005 (+) 1875 WP_014417807.1 DNA mismatch repair endonuclease MutL Machinery gene
  FGF55_RS09025 (FGF55_09025) - 1764250..1764788 (+) 539 Protein_1717 tyrosine-type recombinase/integrase -
  FGF55_RS09030 (FGF55_09030) - 1764994..1765713 (+) 720 WP_014417810.1 hypothetical protein -
  FGF55_RS09035 (FGF55_09035) - 1765901..1766185 (-) 285 WP_014417811.1 hypothetical protein -
  FGF55_RS09040 (FGF55_09040) - 1766191..1766709 (-) 519 WP_014417812.1 hypothetical protein -
  FGF55_RS09045 (FGF55_09045) - 1766992..1767201 (-) 210 WP_032863736.1 hypothetical protein -
  FGF55_RS09055 (FGF55_09055) - 1767916..1768593 (+) 678 WP_014417813.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 624 a.a.        Molecular weight: 70144.35 Da        Isoelectric Point: 5.9381

>NTDB_id=328047 FGF55_RS09015 WP_014417807.1 1762131..1764005(+) (hexB) [Bacillus amyloliquefaciens strain ZJU1]
MAKVIQLSDELSNKIAAGEVVERPASVVKELVENAIDANSTVIEIDIEEAGLSSIRVLDNGEGMETDDCKRAFRRHATSK
IKDENDLFRVRTLGFRGEALPSIASVSHLEIKTSIGEGAGTHLILQGGNIISEQKSSSRKGTEIIVTNLFFNTPARLKYM
KTVHTELGNITDVVNRIALAHPEVSIRLRHQGKNLLQTNGNGDVRHVLAAIYGTAVAKKMIPLHVSSLDFEVKGYIALPE
ITRASRNYMSSVINGRYIKNFPLVKAVHEGYHTLLPIGRHPITFIEITMDPILVDVNVHPSKLEVRLSKETELHELIRDG
IKEVFQKQRLIPSAQLPKKSAPAPAKNEQQFMTFEESAPERKLPEKTPEPSYSPMKLSSVVKEPEPVIIEEEILPNEADH
EVPPELGMAETAAPVSDTPEPEAVSEEIREERVPVMYPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREKVGQVE
PEVQDMIVPLTFHYAANEALIIDQHQHELESVGVFLEAFGTNSYIVRCHPAWFPKGEEAELIEEIIQQVLDAKQIDIKKL
REEAAIMMSCKGSIKANRHLRNDEIKALLDDLRRTTDPFTCPHGRPIIIHHSTYEMEKMFKRVM

Nucleotide


Download         Length: 1875 bp        

>NTDB_id=328047 FGF55_RS09015 WP_014417807.1 1762131..1764005(+) (hexB) [Bacillus amyloliquefaciens strain ZJU1]
TTGGCAAAAGTCATCCAGCTCTCAGATGAACTTTCAAATAAAATAGCGGCCGGCGAGGTGGTCGAACGGCCTGCCTCAGT
TGTTAAAGAATTGGTGGAAAACGCCATCGACGCAAACAGCACAGTCATTGAAATCGACATAGAGGAAGCGGGGCTTTCGT
CGATTCGGGTGCTCGATAACGGCGAAGGTATGGAAACCGATGATTGCAAGCGGGCTTTCCGCCGCCACGCGACCAGTAAA
ATCAAAGATGAAAACGACCTGTTCCGGGTGAGAACACTCGGTTTCCGCGGAGAAGCTTTGCCAAGTATCGCGTCTGTTTC
TCATCTGGAAATCAAAACGAGCATCGGCGAGGGAGCGGGCACCCATCTCATTCTTCAGGGCGGGAATATCATTTCTGAAC
AGAAATCCTCCAGCAGAAAAGGAACGGAGATTATCGTTACCAATCTGTTTTTCAATACACCCGCCAGATTGAAATATATG
AAAACCGTGCATACGGAGCTCGGCAATATTACGGATGTTGTCAACCGGATCGCTCTTGCGCATCCGGAAGTATCGATCCG
TCTCCGCCATCAGGGGAAAAATCTGCTGCAGACAAACGGTAACGGGGACGTGCGCCATGTGCTGGCCGCAATTTACGGGA
CGGCGGTTGCGAAAAAAATGATACCGCTCCATGTCAGCTCGCTTGATTTTGAAGTCAAGGGCTACATTGCGCTTCCGGAA
ATCACGCGTGCATCCAGAAACTACATGTCATCTGTCATTAATGGAAGATACATTAAGAATTTCCCGCTTGTAAAAGCGGT
GCATGAGGGCTATCACACACTTCTGCCGATCGGCCGCCATCCGATTACGTTTATCGAAATTACGATGGACCCGATTTTGG
TCGATGTCAATGTACATCCCTCAAAGCTTGAAGTCCGCCTCAGCAAAGAGACGGAGCTGCATGAGCTGATCCGTGACGGG
ATAAAGGAAGTGTTTCAAAAGCAGCGGCTTATTCCGAGCGCCCAGCTCCCGAAAAAATCAGCGCCGGCACCGGCCAAAAA
CGAACAGCAATTTATGACATTCGAGGAAAGCGCGCCTGAGCGGAAACTTCCTGAAAAAACGCCGGAACCGTCGTACTCAC
CAATGAAGCTGAGTTCGGTCGTAAAAGAGCCTGAGCCGGTAATAATAGAAGAAGAGATTCTCCCGAATGAAGCGGATCAC
GAAGTGCCGCCGGAGCTCGGCATGGCGGAAACGGCAGCGCCTGTTTCCGATACTCCGGAACCGGAAGCTGTCTCTGAAGA
AATACGGGAAGAAAGAGTTCCGGTGATGTATCCGATCGGCCAAATGCACGGGACATATATTTTAGCCCAAAACGAAAACG
GCTTGTATATCATTGACCAGCATGCGGCACAAGAACGGATTAAATACGAATATTTCCGGGAGAAAGTCGGGCAGGTCGAG
CCTGAAGTACAGGACATGATCGTGCCGCTCACCTTTCATTACGCGGCAAACGAAGCGCTGATCATTGACCAGCATCAGCA
TGAGCTTGAAAGTGTCGGAGTGTTTTTAGAAGCATTCGGCACGAACAGCTACATCGTCCGCTGCCATCCGGCCTGGTTTC
CAAAAGGGGAAGAAGCTGAACTGATTGAAGAAATCATTCAGCAGGTGCTTGACGCCAAACAGATCGATATTAAGAAACTG
CGGGAGGAAGCGGCCATTATGATGAGCTGCAAAGGCTCAATCAAAGCGAACCGCCATTTGCGAAACGATGAAATCAAAGC
GCTCTTGGACGACCTGCGCCGAACGACAGACCCGTTCACATGCCCGCACGGCCGGCCGATCATTATCCACCACAGCACGT
ATGAGATGGAGAAGATGTTTAAGCGTGTGATGTAG

Domains

Predicted by InterProScan.

MutL C terminal dimerisation domain (MutL_C)

(439-580)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c_3)

(25-111)

DNA mismatch repair protein, C-terminal domain (DNA_mis_repair)

(209-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexB Streptococcus pneumoniae R6

46.512

100

0.481