Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   FGF55_RS09000 Genome accession   NZ_CP041691
Coordinates   1758182..1758613 (+) Length   143 a.a.
NCBI ID   WP_003154113.1    Uniprot ID   A7Z4X3
Organism   Bacillus amyloliquefaciens strain ZJU1     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1753182..1763613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGF55_RS08980 (FGF55_08980) spoVS 1753751..1754011 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  FGF55_RS08985 (FGF55_08985) tdh 1754269..1755315 (+) 1047 WP_014417804.1 L-threonine 3-dehydrogenase -
  FGF55_RS08990 (FGF55_08990) - 1755328..1756506 (+) 1179 WP_029325912.1 glycine C-acetyltransferase -
  FGF55_RS08995 (FGF55_08995) miaB 1756650..1758179 (+) 1530 WP_014417805.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  FGF55_RS09000 (FGF55_09000) ymcA 1758182..1758613 (+) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  FGF55_RS09005 (FGF55_09005) cotE 1758866..1759411 (+) 546 WP_003154111.1 outer spore coat protein CotE -
  FGF55_RS09010 (FGF55_09010) hexA 1759530..1762115 (+) 2586 WP_032863834.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16082.22 Da        Isoelectric Point: 5.0213

>NTDB_id=328045 FGF55_RS09000 WP_003154113.1 1758182..1758613(+) (ymcA) [Bacillus amyloliquefaciens strain ZJU1]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENEKVSAIINQIKTLQKQAVNLKHYEKLEALKQVESKIDALQE
ELEGIPIIQEFRDSQIEVNDLLQLVAHTISNQVTNEIITSTGGNLLTGETGSKVKHSNNSCSI

Nucleotide


Download         Length: 432 bp        

>NTDB_id=328045 FGF55_RS09000 WP_003154113.1 1758182..1758613(+) (ymcA) [Bacillus amyloliquefaciens strain ZJU1]
ATGACGCTTTACTCTAAGAAAGACATTGTACAGCAGGCTAGGAACCTTGCGAAAATGATTTCTGAAACAGAAGAAGTTGA
TTTTTTCAAACGCGCTGAGGCGCAGATTAACGAAAATGAAAAAGTCTCCGCGATTATTAATCAGATTAAAACCCTGCAAA
AGCAAGCCGTTAACCTGAAGCACTACGAAAAGCTTGAAGCGCTGAAACAAGTGGAAAGTAAAATTGACGCCCTGCAGGAA
GAGCTTGAAGGGATTCCGATCATTCAGGAATTCAGAGATTCCCAGATTGAGGTCAATGACCTTCTTCAGCTTGTCGCACA
TACGATCTCAAATCAGGTGACAAACGAAATCATTACATCTACCGGAGGCAACCTGCTGACGGGAGAAACCGGTTCAAAAG
TAAAACATTCGAATAACAGCTGTTCTATTTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

91.608

100

0.916