Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   FOA56_RS09870 Genome accession   NZ_CP041678
Coordinates   1995694..1996350 (+) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain ESBL 15     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1990694..2001350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOA56_RS09840 (FOA56_09840) dcyD 1991574..1992560 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  FOA56_RS09845 (FOA56_09845) tcyL 1992575..1993243 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  FOA56_RS09850 (FOA56_09850) tcyN 1993240..1993992 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  FOA56_RS09855 (FOA56_09855) sdiA 1994222..1994944 (+) 723 WP_001154271.1 transcriptional regulator SdiA -
  FOA56_RS09860 (FOA56_09860) yecF 1995011..1995235 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  FOA56_RS09865 (FOA56_09865) yecU 1995222..1995398 (-) 177 WP_000590347.1 protein YecU -
  FOA56_RS26465 - 1995481..1995552 (-) 72 Protein_1900 transcriptional regulator -
  FOA56_RS09870 (FOA56_09870) letA 1995694..1996350 (+) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  FOA56_RS09875 (FOA56_09875) uvrC 1996347..1998179 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  FOA56_RS09880 (FOA56_09880) pgsA 1998236..1998784 (+) 549 WP_001160188.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FOA56_RS09900 (FOA56_09900) yecA 1999433..2000098 (+) 666 WP_000847902.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=327832 FOA56_RS09870 WP_000611335.1 1995694..1996350(+) (letA) [Escherichia coli strain ESBL 15]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=327832 FOA56_RS09870 WP_000611335.1 1995694..1996350(+) (letA) [Escherichia coli strain ESBL 15]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486

Multiple sequence alignment