Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FNV58_RS30255 Genome accession   NZ_CP041654
Coordinates   6387393..6387992 (+) Length   199 a.a.
NCBI ID   WP_054231375.1    Uniprot ID   A0ABU3UP30
Organism   Streptomyces sp. RLB1-9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6382393..6392992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNV58_RS30230 (FNV58_30635) - 6382745..6383233 (+) 489 WP_054231371.1 helix-turn-helix domain-containing protein -
  FNV58_RS30235 (FNV58_30640) - 6383318..6385270 (+) 1953 WP_143627484.1 serine/threonine-protein kinase -
  FNV58_RS30240 (FNV58_30645) - 6385384..6385701 (+) 318 Protein_5781 phosphate ABC transporter substrate-binding protein -
  FNV58_RS30245 (FNV58_30655) - 6385937..6386677 (-) 741 WP_143602438.1 SLATT domain-containing protein -
  FNV58_RS30250 (FNV58_30660) - 6386994..6387335 (+) 342 WP_075033091.1 YbaB/EbfC family nucleoid-associated protein -
  FNV58_RS30255 (FNV58_30665) recR 6387393..6387992 (+) 600 WP_054231375.1 recombination mediator RecR Machinery gene
  FNV58_RS30260 (FNV58_30670) - 6387985..6388644 (+) 660 WP_060899733.1 DUF5063 domain-containing protein -
  FNV58_RS30265 (FNV58_30675) - 6388658..6389554 (-) 897 WP_060899734.1 alpha/beta hydrolase -
  FNV58_RS30270 (FNV58_30680) - 6389596..6390063 (-) 468 WP_060899735.1 cupin domain-containing protein -
  FNV58_RS30275 (FNV58_30685) - 6390159..6390683 (+) 525 WP_054231379.1 MarR family transcriptional regulator -
  FNV58_RS30280 (FNV58_30690) - 6390902..6391609 (-) 708 WP_143605520.1 sulfite exporter TauE/SafE family protein -
  FNV58_RS30285 (FNV58_30695) - 6391818..6392318 (+) 501 WP_143627486.1 SgcJ/EcaC family oxidoreductase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21840.26 Da        Isoelectric Point: 4.9848

>NTDB_id=327753 FNV58_RS30255 WP_054231375.1 6387393..6387992(+) (recR) [Streptomyces sp. RLB1-9]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQCLMEVKAKVRFCATCGNVAQEDLCNICRDPRRDLTV
ICVVEEPKDVVAVERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=327753 FNV58_RS30255 WP_054231375.1 6387393..6387992(+) (recR) [Streptomyces sp. RLB1-9]
GTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGTTGGGGCGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAGCCGACGGACGTCCGCCGGCTCGCGCAGTGCCTCATGGAGGTCAAGGCGAAGGTCC
GCTTCTGCGCGACCTGCGGCAATGTGGCGCAGGAGGATCTGTGCAACATCTGCCGCGACCCGCGTCGGGATCTGACCGTC
ATCTGTGTGGTCGAGGAGCCCAAGGACGTCGTCGCGGTCGAGCGGACGCGCGAGTTCCGGGGCAAGTACCACGTGCTGGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGCCCCGACGACCTCCGGATAAGGGAACTCCTCGCCCGTCTCGCCGACGGCA
CGGTCACGGAGCTCATCCTCGCCACCGACCCGAACCTGGAGGGCGAGGCGACGGCCACGTACCTCGCCCGCATGATCAAG
CCCATGGGCCTCAGGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGTGGCGACCTGGAATACGCGGACGAGGTCACACT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

54.592

98.492

0.538
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.093

97.487

0.518
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462