Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FNZ59_RS08845 Genome accession   NZ_CP041628
Coordinates   1814524..1815261 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain PE15     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1809524..1820261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNZ59_RS08830 (FNZ59_08915) clpC 1809978..1812551 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  FNZ59_RS08835 (FNZ59_08920) yfiH 1812681..1813412 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  FNZ59_RS08840 (FNZ59_08925) rluD 1813409..1814389 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FNZ59_RS08845 (FNZ59_08930) comL 1814524..1815261 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  FNZ59_RS08850 (FNZ59_08935) raiA 1815532..1815873 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  FNZ59_RS08855 (FNZ59_08940) - 1816024..1816830 (-) 807 WP_000215756.1 site-specific DNA-methyltransferase -
  FNZ59_RS08860 (FNZ59_08945) - 1816827..1816970 (-) 144 WP_104774269.1 Com family DNA-binding transcriptional regulator -
  FNZ59_RS08865 (FNZ59_08950) - 1817164..1817460 (-) 297 WP_001519189.1 TM2 domain-containing protein -
  FNZ59_RS08870 (FNZ59_08955) - 1817596..1817736 (-) 141 WP_000078916.1 Hok/Gef family protein -
  FNZ59_RS08875 (FNZ59_08960) - 1817927..1818187 (-) 261 WP_000488105.1 ogr/Delta-like zinc finger family protein -
  FNZ59_RS08880 (FNZ59_08965) - 1818230..1819339 (-) 1110 WP_032419529.1 phage late control D family protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=327544 FNZ59_RS08845 WP_000197686.1 1814524..1815261(+) (comL) [Escherichia coli strain PE15]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=327544 FNZ59_RS08845 WP_000197686.1 1814524..1815261(+) (comL) [Escherichia coli strain PE15]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment