Detailed information    

insolico Bioinformatically predicted

Overview


Name   degQ   Type   Regulator
Locus tag   EG882_RS08145 Genome accession   NZ_CP033967
Coordinates   1560345..1560485 (+) Length   46 a.a.
NCBI ID   WP_003152043.1    Uniprot ID   A3KLB4
Organism   Bacillus velezensis strain 1B-23     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context


Location: 1555345..1565485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG882_RS08115 (EG882_08115) - 1555649..1556047 (+) 399 WP_015240486.1 DUF1694 domain-containing protein -
  EG882_RS08120 (EG882_08120) - 1556144..1556695 (+) 552 WP_003152033.1 isochorismatase family cysteine hydrolase -
  EG882_RS08125 (EG882_08125) - 1556713..1558179 (+) 1467 WP_020954301.1 nicotinate phosphoribosyltransferase -
  EG882_RS08130 (EG882_08130) - 1558309..1559532 (+) 1224 WP_007408678.1 EAL and HDOD domain-containing protein -
  EG882_RS08135 (EG882_08135) - 1559539..1559880 (-) 342 WP_124692757.1 hypothetical protein -
  EG882_RS08145 (EG882_08145) degQ 1560345..1560485 (+) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  EG882_RS08150 (EG882_08150) - 1560637..1561512 (+) 876 WP_025285191.1 polyprenyl synthetase family protein -
  EG882_RS08155 (EG882_08155) comX 1561527..1561703 (+) 177 WP_015240484.1 competence pheromone ComX -
  EG882_RS08160 (EG882_08160) comP 1561722..1564028 (+) 2307 WP_124692758.1 sensor histidine kinase Regulator
  EG882_RS08165 (EG882_08165) comA 1564109..1564753 (+) 645 WP_003152052.1 response regulator transcription factor Regulator
  EG882_RS08170 (EG882_08170) - 1564775..1565158 (+) 384 WP_012118312.1 hotdog fold thioesterase -

Sequence


Protein


Download         Length: 46 a.a.        Molecular weight: 5518.30 Da        Isoelectric Point: 4.9432

>NTDB_id=327458 EG882_RS08145 WP_003152043.1 1560345..1560485(+) (degQ) [Bacillus velezensis strain 1B-23]
MENKLEEVKQLLFRLENDIRETTDSLRNINKSIDQLDKFSYAMKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=327458 EG882_RS08145 WP_003152043.1 1560345..1560485(+) (degQ) [Bacillus velezensis strain 1B-23]
GTGGAAAACAAATTAGAAGAAGTAAAGCAATTATTATTCCGACTTGAAAATGATATCAGAGAAACAACCGACTCATTACG
AAACATTAACAAAAGCATTGATCAGCTCGATAAATTCTCATATGCAATGAAAATTTCTTAA

Domains


Predicted by InterproScan.

(1-46)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A3KLB4

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

89.13

100

0.891


Multiple sequence alignment