Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   EG882_RS06170 Genome accession   NZ_CP033967
Coordinates   1177468..1178157 (+) Length   229 a.a.
NCBI ID   WP_199022660.1    Uniprot ID   -
Organism   Bacillus velezensis strain 1B-23     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1172468..1183157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG882_RS06145 (EG882_06145) degS 1172751..1173914 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  EG882_RS06150 (EG882_06150) degU 1173991..1174680 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  EG882_RS06155 (EG882_06155) - 1174778..1175626 (+) 849 WP_003151387.1 DegV family protein -
  EG882_RS06160 (EG882_06160) comFA 1175735..1177120 (+) 1386 WP_124692700.1 DEAD/DEAH box helicase Machinery gene
  EG882_RS06165 (EG882_06165) - 1177178..1177462 (+) 285 WP_007407481.1 competence protein ComFB -
  EG882_RS06170 (EG882_06170) comFC 1177468..1178157 (+) 690 WP_199022660.1 phosphoribosyltransferase family protein Machinery gene
  EG882_RS06175 (EG882_06175) - 1178231..1178650 (+) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  EG882_RS06180 (EG882_06180) flgM 1178720..1178986 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  EG882_RS06185 (EG882_06185) - 1179001..1179483 (+) 483 WP_003151394.1 flagellar protein FlgN -
  EG882_RS06190 (EG882_06190) flgK 1179499..1181016 (+) 1518 WP_025285351.1 flagellar hook-associated protein FlgK -
  EG882_RS06195 (EG882_06195) flgL 1181028..1181945 (+) 918 WP_015240685.1 flagellar hook-associated protein FlgL -
  EG882_RS06200 (EG882_06200) - 1182036..1182605 (+) 570 WP_007407476.1 DUF6470 family protein -
  EG882_RS06205 (EG882_06205) fliW 1182635..1183066 (+) 432 WP_015240684.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25243.86 Da        Isoelectric Point: 8.2927

>NTDB_id=327455 EG882_RS06170 WP_199022660.1 1177468..1178157(+) (comFC) [Bacillus velezensis strain 1B-23]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRRNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=327455 EG882_RS06170 WP_199022660.1 1177468..1178157(+) (comFC) [Bacillus velezensis strain 1B-23]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCGAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594

Multiple sequence alignment