Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   EGT29_RS03985 Genome accession   NZ_CP033966
Coordinates   813631..815106 (-) Length   491 a.a.
NCBI ID   WP_124687800.1    Uniprot ID   -
Organism   Pigmentiphaga sp. H8     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 808631..820106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGT29_RS28915 - 808714..808968 (+) 255 WP_370283017.1 MFS transporter -
  EGT29_RS03960 (EGT29_03960) - 808982..810061 (-) 1080 WP_124687796.1 septal ring lytic transglycosylase RlpA family protein -
  EGT29_RS03965 (EGT29_03965) rapZ 810065..810997 (-) 933 WP_124687797.1 RNase adapter RapZ -
  EGT29_RS03970 (EGT29_03970) hprK 811182..812114 (-) 933 WP_124687798.1 HPr(Ser) kinase/phosphatase -
  EGT29_RS03975 (EGT29_03975) ptsN 812154..812630 (-) 477 WP_087837517.1 PTS IIA-like nitrogen regulatory protein PtsN -
  EGT29_RS03980 (EGT29_03980) hpf 813025..813354 (-) 330 WP_124687799.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  EGT29_RS03985 (EGT29_03985) rpoN/rpoN1 813631..815106 (-) 1476 WP_124687800.1 RNA polymerase factor sigma-54 Machinery gene
  EGT29_RS03990 (EGT29_03990) lptB 815116..815925 (-) 810 WP_124687801.1 LPS export ABC transporter ATP-binding protein -
  EGT29_RS03995 (EGT29_03995) lptA 815922..816530 (-) 609 WP_124687802.1 lipopolysaccharide transport periplasmic protein LptA -
  EGT29_RS04000 (EGT29_04000) lptC 816538..817155 (-) 618 WP_238160282.1 LPS export ABC transporter periplasmic protein LptC -
  EGT29_RS04005 (EGT29_04005) - 817152..817760 (-) 609 WP_124687804.1 HAD family hydrolase -
  EGT29_RS04010 (EGT29_04010) - 817766..818782 (-) 1017 WP_124687805.1 SIS domain-containing protein -
  EGT29_RS04015 (EGT29_04015) - 818992..819531 (+) 540 WP_124687806.1 adenine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 491 a.a.        Molecular weight: 53478.72 Da        Isoelectric Point: 4.7675

>NTDB_id=327418 EGT29_RS03985 WP_124687800.1 813631..815106(-) (rpoN/rpoN1) [Pigmentiphaga sp. H8]
MLKPGLQLRTSQHLALTPALQQSIKLLQLSTLELEHEIEQILQENPLLEREDDPVAATLRVDADGSMHTTTPASPEADAE
PGGEAVEAPSPADAGDAPDLPDMPELHRPGGEHDDDTAPQLAAPDASLREHLLGQLALTQATPRDAALVTALVDELDDNG
YLDVSLEELAALFPPELEIDADELRSALGLLQSFDPAGVGARNISECLCLQLRVPDLDCLPEARDADVLALARQIAAQHL
PLLGARDYAKLRKALGCNDDQLRAAQSLIRRLDPRPGSRYSSPAADYVVPDVIVRKAGNQWRAMLNGEAMPRLRINQMYA
QILKSERSSAHPGLSSQLQEARWLIRNVQQRFDTILRVAQAIVDRQQGFLNHGEVAMRPLVLREIADTLGLHESTISRVT
TQKYMLTPLGTFELKYFFGSHVATETGGAASSTAIRALIKQLIGAEDPTQPLSDSQLAQTLGEQGIVVARRTVAKYREAL
KIPPVSLRKSI

Nucleotide


Download         Length: 1476 bp        

>NTDB_id=327418 EGT29_RS03985 WP_124687800.1 813631..815106(-) (rpoN/rpoN1) [Pigmentiphaga sp. H8]
ATGCTCAAACCCGGACTCCAACTTCGCACCTCCCAGCACCTGGCGCTGACGCCGGCGCTGCAGCAGTCGATCAAGCTGCT
GCAGTTGTCGACGCTCGAACTCGAACACGAGATCGAGCAGATCCTGCAGGAGAACCCGCTGCTTGAACGCGAGGACGACC
CTGTGGCGGCCACGCTGCGGGTCGACGCCGACGGCAGCATGCACACGACCACGCCCGCCTCGCCGGAAGCCGACGCCGAA
CCGGGCGGCGAGGCCGTGGAGGCGCCGTCGCCGGCCGACGCCGGCGACGCGCCGGACCTGCCCGACATGCCGGAGCTGCA
CCGCCCCGGCGGCGAGCACGACGACGACACCGCGCCGCAATTGGCGGCGCCCGATGCCTCGCTGCGCGAGCACCTGCTGG
GCCAGCTCGCGCTGACGCAGGCCACGCCGCGCGATGCGGCGCTGGTGACGGCGCTGGTCGACGAACTGGACGACAACGGC
TACCTGGACGTGTCGCTGGAAGAACTGGCCGCGCTGTTCCCGCCCGAGCTGGAAATCGACGCCGACGAACTGCGTTCGGC
GCTGGGGCTGCTCCAGTCCTTCGATCCGGCCGGCGTGGGCGCCCGCAACATCTCCGAATGCCTGTGCCTGCAATTGCGCG
TGCCGGACCTCGATTGCCTGCCCGAGGCCCGCGATGCCGACGTGCTGGCCCTGGCCCGCCAGATCGCCGCCCAGCACCTG
CCGCTGCTGGGCGCGCGGGACTACGCCAAGCTGCGCAAGGCGCTGGGCTGCAACGACGACCAGCTGCGCGCGGCCCAGAG
CCTGATCCGCCGGCTCGACCCGCGACCCGGTTCGCGCTATTCGTCGCCCGCCGCGGACTACGTCGTGCCCGACGTGATCG
TGCGCAAGGCCGGCAACCAGTGGCGCGCCATGCTCAACGGCGAAGCCATGCCGCGGCTGCGCATCAACCAGATGTACGCG
CAGATCCTGAAGTCCGAGCGCAGCTCGGCCCATCCCGGGCTGTCCTCGCAGCTGCAGGAGGCGCGCTGGCTGATACGCAA
TGTCCAGCAACGCTTCGACACCATTCTGCGCGTGGCCCAGGCCATCGTCGACCGGCAGCAGGGTTTCCTCAACCATGGCG
AAGTCGCCATGCGGCCTCTTGTATTACGCGAAATAGCAGATACACTAGGCTTGCATGAGTCGACGATCTCACGCGTCACT
ACGCAGAAATACATGCTCACCCCGCTGGGGACTTTCGAGTTGAAGTATTTCTTCGGCAGCCACGTCGCCACGGAGACCGG
AGGAGCGGCATCGTCCACGGCGATCCGTGCGCTGATCAAGCAACTCATTGGTGCGGAGGATCCTACCCAGCCACTATCCG
ACAGCCAACTTGCGCAGACGCTGGGGGAGCAGGGTATCGTCGTGGCCCGCCGCACGGTGGCCAAATACCGCGAAGCGCTC
AAGATTCCGCCGGTTTCCCTGCGTAAGAGCATCTAG

Domains

Predicted by InterProScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(6-49)

Sigma-54, DNA binding domain (Sigma54_DBD)

(335-489)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(121-319)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

58.661

100

0.607

Multiple sequence alignment