Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HPB8_RS01430 Genome accession   NC_014256
Coordinates   268902..269951 (-) Length   349 a.a.
NCBI ID   WP_000115456.1    Uniprot ID   -
Organism   Helicobacter pylori B8     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 263902..274951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPB8_RS01410 (HPB8_295) rpsG 264281..264748 (+) 468 WP_001254368.1 30S ribosomal protein S7 -
  HPB8_RS01415 (HPB8_296) fusA 264760..266838 (+) 2079 WP_000101886.1 elongation factor G -
  HPB8_RS01420 (HPB8_297) - 267396..268385 (-) 990 WP_025444656.1 aldo/keto reductase -
  HPB8_RS08730 (HPB8_299) - 268604..268768 (+) 165 WP_000744175.1 hypothetical protein -
  HPB8_RS01430 (HPB8_300) waaF 268902..269951 (-) 1050 WP_000115456.1 lipopolysaccharide heptosyltransferase II Regulator
  HPB8_RS01435 (HPB8_301) hisS 270013..271341 (+) 1329 WP_000632502.1 histidine--tRNA ligase -
  HPB8_RS01440 (HPB8_302) asd 271328..272368 (+) 1041 WP_000860950.1 aspartate-semialdehyde dehydrogenase -
  HPB8_RS01445 (HPB8_303) - 272781..273830 (+) 1050 WP_000446651.1 DUF874 family protein -
  HPB8_RS01450 (HPB8_304) - 274052..274795 (-) 744 WP_001862206.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39525.36 Da        Isoelectric Point: 9.6622

>NTDB_id=32738 HPB8_RS01430 WP_000115456.1 268902..269951(-) (waaF) [Helicobacter pylori B8]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAIALNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLEKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVAAALLEKGHEIYFFGAKEDTIVFEEILKLIKGLLKNPLLSH
NAYNLCGKTSIEELIQRIAILDLFITNDSGPMHVAASTQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCAPCKKRVCP
LKNEKNHLCMKSITPLEVLEAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=32738 HPB8_RS01430 WP_000115456.1 268902..269951(-) (waaF) [Helicobacter pylori B8]
ATGAGCGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTCATAGACGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCCCAAAAAATAGGGCGTTGCGATATAGCGATCGCATTAAACAACCATTTCTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTCAGCCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAGAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTGCGGCTGCTTTGTTAGAAAAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGATACTATCGTTTTTGAAGAAATTTTAAAACTCATCAAAGGCTTGTTAAAAAACCCCTTATTATCCCAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAACGCATCGCAATTTTAGATTTATTCATCACTAA
CGATAGCGGCCCCATGCATGTGGCTGCTAGCACGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAACGATTGTGTTAAACCACCATTTAAGCTGTGCGCCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCACTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTAGAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

38.372

98.567

0.378

Multiple sequence alignment