Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   FNV62_RS29025 Genome accession   NZ_CP041610
Coordinates   6393249..6394658 (-) Length   469 a.a.
NCBI ID   WP_054228679.1    Uniprot ID   A0ABU3UNJ0
Organism   Streptomyces sp. RLB3-17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6388249..6399658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNV62_RS29000 (FNV62_29445) - 6388337..6388990 (-) 654 WP_373559504.1 hypothetical protein -
  FNV62_RS29005 (FNV62_29450) - 6388978..6389517 (-) 540 WP_060898668.1 SigE family RNA polymerase sigma factor -
  FNV62_RS29010 (FNV62_29455) - 6389784..6390707 (-) 924 WP_054228676.1 A/G-specific adenine glycosylase -
  FNV62_RS29015 (FNV62_29460) - 6391044..6391889 (+) 846 WP_143602512.1 hypothetical protein -
  FNV62_RS29020 (FNV62_29465) disA 6392045..6393169 (-) 1125 WP_054228678.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  FNV62_RS29025 (FNV62_29470) radA/sms 6393249..6394658 (-) 1410 WP_054228679.1 DNA repair protein RadA Machinery gene
  FNV62_RS29030 (FNV62_29475) - 6394866..6396662 (+) 1797 WP_382142378.1 BACON domain-containing protein -
  FNV62_RS29035 (FNV62_29480) - 6396708..6397568 (-) 861 WP_097285710.1 hypothetical protein -
  FNV62_RS29040 (FNV62_29485) - 6397640..6398572 (+) 933 WP_054228682.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49723.91 Da        Isoelectric Point: 8.0102

>NTDB_id=327225 FNV62_RS29025 WP_054228679.1 6393249..6394658(-) (radA/sms) [Streptomyces sp. RLB3-17]
MAARTKTAKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTTPGRVTTSAVPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLIAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRADRIKAIDDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPSDPGKIPAGMKVLEVADMGEALRVLPRSRHREAPRDEEQRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=327225 FNV62_RS29025 WP_054228679.1 6393249..6394658(-) (radA/sms) [Streptomyces sp. RLB3-17]
ATGGCTGCCCGTACGAAAACCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGATGGCAGACGGCCAAATGGCT
GGGCCGCTGTCCCGAGTGCCAGGCGTGGGGCACGGTCGAGGAGTACGGCGCACCCGCGGTCCGTACGACGACACCGGGCC
GCGTCACCACCTCCGCGGTGCCGATCGGGCAGGTCGACGGCCGCCAGGCCACGGCCCGCTCCACCGGCGTACCCGAGCTG
GACCGCGTCCTGGGCGGCGGTCTCGTGCCCGGCGCGGTCGTCCTGATCGCGGGCGAGCCCGGTGTGGGCAAGTCCACGCT
CCTCCTGGACGTGGCGGCGAAGGCGGCGAGCGACGAGCACCGCACGCTGTACGTGACGGGTGAGGAGTCGGCCAGCCAGG
TCCGTCTGCGCGCCGACCGCATCAAGGCGATCGACGACCACCTGTATCTGGCGGCGGAGACCGACCTGGCCGCCGTGCTC
GGCCACTTGGACGCCGTGAAGCCCTCGCTCCTCATCCTGGACTCGGTCCAGACCGTCGCCTCTCCGGAGATCGACGGGGC
GCCCGGCGGCATGGCCCAGGTCCGGGAGGTCGCCGGGGCGCTCATCCGTGCCTCCAAGGAGCGCGGCATGTCCACGCTCC
TTGTGGGCCATGTCACCAAGGACGGCGCGATCGCGGGCCCCCGCCTGCTCGAACACCTGGTGGACGTCGTCCTGAGCTTC
GAGGGCGACCGCCACGCGCGCCTGCGTCTCGTCCGAGGGGTCAAGAACCGGTACGGGACGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACGGGCCTCGCGGACCCCTCCGGCCTCTTCCTGACCCGCCGTGCCGAGCCCGTCCCCG
GCACGTGCCTGACCGTCACCCTGGAGGGCCGCCGCCCGCTGGTGGCCGAGGTGCAGGCCCTCACCGTCGACTCCCAGATC
CCCTCCCCGCGTCGTACGACGTCCGGCCTGGAGACCTCCCGGGTCTCGATGATGTTGGCGGTCCTGGAGCAGCGGGGCCG
GATCAGCGCCCTCGGGAAGCGGGACATCTACTCGGCGACGGTGGGCGGCGTGAAGCTCTCCGAGCCCGCCGCGGACCTCG
CGATCGCCCTCGCGCTCGCGTCGGCGGCGAGTGACACCCCTCTCCCCAAGAACCTCGTGGCGATCGGCGAAGTAGGGCTC
GCGGGCGAGGTCAGACGGGTCACGGGAGTGCAGCGAAGGCTCGCCGAAGCCCACCGTCTGGGCTTCACCCACGCCCTCGT
TCCCAGCGATCCGGGCAAGATCCCCGCCGGTATGAAGGTCCTGGAAGTCGCCGACATGGGCGAGGCGCTGCGGGTCCTTC
CACGCTCCCGTCACAGAGAGGCCCCACGGGACGAGGAGCAGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.709

96.588

0.422
  radA Streptococcus mitis SK321

43.046

96.588

0.416
  radA Streptococcus mitis NCTC 12261

43.046

96.588

0.416
  radA Streptococcus pneumoniae Rx1

43.111

95.949

0.414
  radA Streptococcus pneumoniae TIGR4

43.111

95.949

0.414
  radA Streptococcus pneumoniae D39

43.111

95.949

0.414
  radA Streptococcus pneumoniae R6

43.111

95.949

0.414