Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   FNV62_RS11210 Genome accession   NZ_CP041610
Coordinates   2383475..2384137 (+) Length   220 a.a.
NCBI ID   WP_143612798.1    Uniprot ID   -
Organism   Streptomyces sp. RLB3-17     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2378475..2389137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNV62_RS11185 (FNV62_11345) mug 2379482..2380063 (+) 582 WP_143612793.1 G/U mismatch-specific DNA glycosylase -
  FNV62_RS11190 (FNV62_11350) - 2380041..2380478 (-) 438 WP_143612794.1 hypothetical protein -
  FNV62_RS11195 (FNV62_11355) - 2380520..2381245 (-) 726 WP_143612795.1 ABC transporter permease subunit -
  FNV62_RS11200 (FNV62_11360) - 2381242..2382183 (-) 942 WP_143612796.1 ABC transporter ATP-binding protein -
  FNV62_RS11205 (FNV62_11365) - 2382291..2383460 (+) 1170 WP_143612797.1 sensor histidine kinase -
  FNV62_RS11210 (FNV62_11370) vraR 2383475..2384137 (+) 663 WP_143612798.1 response regulator transcription factor Regulator
  FNV62_RS11215 (FNV62_11375) - 2384260..2385417 (+) 1158 WP_054229016.1 ROK family transcriptional regulator -
  FNV62_RS11220 (FNV62_11380) - 2385522..2386283 (-) 762 WP_143612799.1 GntR family transcriptional regulator -
  FNV62_RS11225 (FNV62_11385) - 2386539..2387423 (-) 885 WP_143612800.1 RNA polymerase sigma-70 factor -
  FNV62_RS11230 (FNV62_11390) - 2387579..2388409 (+) 831 WP_054229019.1 alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23372.99 Da        Isoelectric Point: 4.9794

>NTDB_id=327182 FNV62_RS11210 WP_143612798.1 2383475..2384137(+) (vraR) [Streptomyces sp. RLB3-17]
MPVTVLLVDDEPLVRAGLRAVLAAQRDIEVVGEAADGAAVIPLVRQLRPDVVAMDVRMPLMDGIEATRALLRTVSDPPKI
LVVTTFENDEYVYEALRAGADGFLLKRARPAEIVHAVRLVAEGESLLFPASVRQLAAEYGDGGGNPAARAAMERAALTER
EAEVLRLMARGLSNAEIAGRLIVGTETVKSHVSAVLAKLGARDRTQAVIAAYESGFVAPS

Nucleotide


Download         Length: 663 bp        

>NTDB_id=327182 FNV62_RS11210 WP_143612798.1 2383475..2384137(+) (vraR) [Streptomyces sp. RLB3-17]
ATGCCGGTCACCGTTCTCCTCGTCGACGACGAACCGCTCGTCCGCGCGGGTCTGCGGGCCGTCCTGGCGGCGCAGCGCGA
CATCGAGGTCGTGGGAGAGGCGGCCGACGGCGCCGCGGTGATCCCGCTCGTGCGGCAGCTGCGGCCGGACGTCGTCGCCA
TGGACGTCCGCATGCCGCTCATGGACGGCATCGAGGCCACGCGCGCGCTCCTGCGGACCGTGAGCGATCCCCCGAAGATC
CTCGTCGTGACCACGTTCGAGAACGACGAGTACGTGTACGAGGCGCTGCGCGCGGGTGCCGACGGTTTTCTGCTGAAGCG
GGCCAGGCCCGCCGAGATCGTGCACGCCGTGCGGCTCGTCGCGGAGGGCGAGTCGCTGCTGTTCCCTGCGTCCGTACGGC
AGTTGGCGGCCGAGTACGGGGACGGTGGCGGGAATCCGGCGGCGCGGGCGGCCATGGAGCGCGCCGCGCTGACCGAGCGG
GAGGCGGAGGTGCTGCGGCTGATGGCCCGGGGGCTGTCGAACGCGGAGATCGCCGGGCGGCTGATCGTCGGAACCGAGAC
GGTCAAGTCGCACGTCAGCGCCGTACTGGCGAAGCTGGGAGCCCGGGACCGTACGCAGGCGGTCATCGCGGCGTACGAGT
CGGGGTTCGTGGCCCCGAGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-118)

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.553

99.545

0.414
  degU Bacillus subtilis subsp. subtilis str. 168

36.161

100

0.368