Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   FNV66_RS29220 Genome accession   NZ_CP041607
Coordinates   6155494..6156168 (+) Length   224 a.a.
NCBI ID   WP_143602428.1    Uniprot ID   -
Organism   Streptomyces sp. S1D4-14     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6150494..6161168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNV66_RS29200 (FNV66_29530) - 6150546..6151424 (+) 879 WP_054231354.1 alpha/beta hydrolase -
  FNV66_RS29205 (FNV66_29535) - 6151696..6152739 (+) 1044 WP_375336769.1 alpha/beta hydrolase -
  FNV66_RS29210 (FNV66_29540) - 6152870..6154081 (+) 1212 WP_143602427.1 acyltransferase -
  FNV66_RS29215 (FNV66_29545) - 6154091..6155497 (+) 1407 WP_373559501.1 sensor histidine kinase -
  FNV66_RS29220 (FNV66_29550) vraR 6155494..6156168 (+) 675 WP_143602428.1 response regulator transcription factor Regulator
  FNV66_RS29225 (FNV66_29555) - 6156281..6157630 (+) 1350 WP_179858232.1 sensor histidine kinase -
  FNV66_RS29230 (FNV66_29560) vraR 6157627..6158301 (+) 675 WP_054231357.1 response regulator transcription factor Regulator
  FNV66_RS29235 (FNV66_29565) - 6158437..6159702 (+) 1266 WP_143602429.1 cytochrome P450 -
  FNV66_RS29240 (FNV66_29570) - 6159686..6159925 (-) 240 WP_169081065.1 hypothetical protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24203.84 Da        Isoelectric Point: 4.7304

>NTDB_id=327121 FNV66_RS29220 WP_143602428.1 6155494..6156168(+) (vraR) [Streptomyces sp. S1D4-14]
MTSSTIRVLIADDQQMVRQGFTVLLNTQPDIEVVGQAVDGLDAISKVAELAPDVVLMDIRMPELGGIDATRRITGETPHI
KVLVLTTFDLDEYVYEALRAGASGFLLKDASADQLAEAVRVVAAGDALLAPGITRRLIAEFSRLDSTPRAPLKQRVGELT
ERETEVLALIAQGLSNAEIAERLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLVRPSGY

Nucleotide


Download         Length: 675 bp        

>NTDB_id=327121 FNV66_RS29220 WP_143602428.1 6155494..6156168(+) (vraR) [Streptomyces sp. S1D4-14]
ATGACGAGCAGCACCATCCGCGTACTGATCGCCGATGACCAGCAGATGGTCCGCCAGGGTTTCACCGTGCTGCTGAACAC
CCAGCCCGACATCGAGGTGGTCGGCCAGGCGGTCGACGGCCTGGACGCGATCTCCAAGGTCGCCGAACTCGCCCCGGACG
TCGTGCTGATGGACATCCGTATGCCCGAGCTCGGTGGCATCGACGCGACCAGACGCATCACCGGCGAGACCCCGCACATC
AAGGTGCTGGTGCTCACCACCTTCGACCTCGACGAGTACGTGTACGAGGCGCTGCGGGCCGGCGCCTCCGGGTTCCTGCT
CAAGGACGCGTCCGCCGACCAGTTGGCCGAGGCGGTACGGGTGGTGGCGGCGGGCGACGCGCTGCTCGCCCCCGGGATCA
CCCGCCGTCTCATCGCCGAGTTCTCCCGCCTGGACTCCACACCCCGCGCCCCGCTCAAGCAGCGCGTGGGGGAGCTGACC
GAGCGGGAGACGGAGGTGCTGGCCCTCATCGCGCAGGGCCTGTCGAACGCGGAGATCGCCGAGCGCCTGGTCGTCGCCGA
GCAGACCGTGAAGACCCATGTGGGCCGCATCCTGGTGAAGCTGGGCCTGCGCGACCGCACCCAGGCCGCGGTCTTCGCCT
ACGAGTCTGGCCTTGTGCGCCCGTCCGGCTACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-120)

Bacterial regulatory proteins, luxR family (GerE)

(159-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.37

96.429

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

41.333

100

0.415