Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | EG346_RS11025 | Genome accession | NZ_CP033920 |
| Coordinates | 2428108..2428761 (-) | Length | 217 a.a. |
| NCBI ID | WP_073335223.1 | Uniprot ID | A0A1M7KQ65 |
| Organism | Chryseobacterium carnipullorum strain G0188 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2423108..2433761
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EG346_RS25100 | - | 2423140..2423461 (+) | 322 | Protein_2145 | RHS repeat-associated core domain-containing protein | - |
| EG346_RS11000 (EG346_11080) | - | 2424135..2424497 (+) | 363 | WP_073335226.1 | hypothetical protein | - |
| EG346_RS11010 (EG346_11090) | der | 2425194..2426504 (+) | 1311 | WP_047450295.1 | ribosome biogenesis GTPase Der | - |
| EG346_RS11015 (EG346_11095) | upp | 2426588..2427241 (+) | 654 | WP_073335225.1 | uracil phosphoribosyltransferase | - |
| EG346_RS11020 (EG346_11100) | - | 2427247..2427936 (-) | 690 | WP_123878637.1 | alpha/beta fold hydrolase | - |
| EG346_RS11025 (EG346_11105) | comF | 2428108..2428761 (-) | 654 | WP_073335223.1 | ComF family protein | Machinery gene |
| EG346_RS11030 (EG346_11110) | - | 2428887..2430371 (-) | 1485 | WP_123878639.1 | helix-turn-helix domain-containing protein | - |
| EG346_RS11035 (EG346_11115) | aceB | 2430497..2432074 (+) | 1578 | WP_123878641.1 | malate synthase A | - |
| EG346_RS11040 (EG346_11120) | aceA | 2432280..2433563 (+) | 1284 | WP_394343281.1 | isocitrate lyase | - |
Sequence
Protein
Download Length: 217 a.a. Molecular weight: 25189.92 Da Isoelectric Point: 6.8206
>NTDB_id=327110 EG346_RS11025 WP_073335223.1 2428108..2428761(-) (comF) [Chryseobacterium carnipullorum strain G0188]
MILDLFFPNRCIECSRIIDSDLLVCSLCFEQIHFTHFDYSGDNIIREKCKLLFPIENTYALMRFEQDSLSQKIIHELKYK
SRENAGKTLAEWTKERLNFNEEKPDILVSVPLHPKKLKERGYNQLHVFTETLSTFYHIPFDHELIQRNHYSKAQALKDKQ
HRLETTNPFSLSKSISGKHILLIDDVFTTGSTVSSIAWEILNAGDNKVSVLVMAVDV
MILDLFFPNRCIECSRIIDSDLLVCSLCFEQIHFTHFDYSGDNIIREKCKLLFPIENTYALMRFEQDSLSQKIIHELKYK
SRENAGKTLAEWTKERLNFNEEKPDILVSVPLHPKKLKERGYNQLHVFTETLSTFYHIPFDHELIQRNHYSKAQALKDKQ
HRLETTNPFSLSKSISGKHILLIDDVFTTGSTVSSIAWEILNAGDNKVSVLVMAVDV
Nucleotide
Download Length: 654 bp
>NTDB_id=327110 EG346_RS11025 WP_073335223.1 2428108..2428761(-) (comF) [Chryseobacterium carnipullorum strain G0188]
ATGATATTAGATTTATTTTTTCCCAACCGCTGTATTGAATGTAGCCGGATCATAGATTCAGATCTTTTGGTTTGCAGTTT
ATGTTTTGAACAGATTCATTTTACTCATTTTGACTATTCTGGTGATAACATCATTAGAGAAAAATGCAAACTTTTGTTTC
CCATTGAAAATACCTATGCCCTGATGAGGTTTGAGCAGGATAGTTTAAGTCAAAAGATTATCCACGAACTGAAATATAAA
AGCAGGGAAAATGCCGGTAAAACTCTTGCCGAATGGACCAAGGAACGTTTGAATTTCAATGAAGAAAAACCAGATATTCT
GGTATCTGTTCCGCTTCATCCTAAAAAATTAAAGGAACGGGGCTATAACCAACTGCATGTATTTACAGAAACATTGTCGA
CGTTTTATCATATCCCATTTGACCACGAATTGATCCAAAGAAATCACTATTCAAAAGCACAGGCCTTAAAGGATAAACAA
CACCGTTTGGAAACAACGAATCCATTTTCTCTTTCAAAGTCAATTTCGGGAAAGCATATTCTTTTGATTGATGATGTTTT
CACGACGGGAAGTACTGTTTCATCTATTGCCTGGGAAATTTTAAATGCAGGAGATAATAAAGTGAGCGTTCTGGTGATGG
CAGTGGATGTTTAG
ATGATATTAGATTTATTTTTTCCCAACCGCTGTATTGAATGTAGCCGGATCATAGATTCAGATCTTTTGGTTTGCAGTTT
ATGTTTTGAACAGATTCATTTTACTCATTTTGACTATTCTGGTGATAACATCATTAGAGAAAAATGCAAACTTTTGTTTC
CCATTGAAAATACCTATGCCCTGATGAGGTTTGAGCAGGATAGTTTAAGTCAAAAGATTATCCACGAACTGAAATATAAA
AGCAGGGAAAATGCCGGTAAAACTCTTGCCGAATGGACCAAGGAACGTTTGAATTTCAATGAAGAAAAACCAGATATTCT
GGTATCTGTTCCGCTTCATCCTAAAAAATTAAAGGAACGGGGCTATAACCAACTGCATGTATTTACAGAAACATTGTCGA
CGTTTTATCATATCCCATTTGACCACGAATTGATCCAAAGAAATCACTATTCAAAAGCACAGGCCTTAAAGGATAAACAA
CACCGTTTGGAAACAACGAATCCATTTTCTCTTTCAAAGTCAATTTCGGGAAAGCATATTCTTTTGATTGATGATGTTTT
CACGACGGGAAGTACTGTTTCATCTATTGCCTGGGAAATTTTAAATGCAGGAGATAATAAAGTGAGCGTTCTGGTGATGG
CAGTGGATGTTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
51.852 |
99.539 |
0.516 |