Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HMPREF0837_RS09160 Genome accession   NC_014251
Coordinates   1754389..1754985 (-) Length   198 a.a.
NCBI ID   WP_000966740.1    Uniprot ID   -
Organism   Streptococcus pneumoniae TCH8431/19A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1749389..1759985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF0837_RS09140 (HMPREF0837_11910) - 1750320..1751024 (-) 705 WP_001055251.1 TIGR02206 family membrane protein -
  HMPREF0837_RS09145 (HMPREF0837_11911) - 1751115..1751726 (-) 612 WP_000994206.1 NUDIX hydrolase -
  HMPREF0837_RS09150 (HMPREF0837_11912) murF 1751713..1753086 (-) 1374 WP_000778689.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  HMPREF0837_RS09155 (HMPREF0837_11913) - 1753170..1754213 (-) 1044 WP_000814694.1 D-alanine--D-alanine ligase -
  HMPREF0837_RS09160 (HMPREF0837_11914) recR 1754389..1754985 (-) 597 WP_000966740.1 recombination mediator RecR Machinery gene
  HMPREF0837_RS09165 (HMPREF0837_11915) pbp2b 1754996..1757053 (-) 2058 WP_073078393.1 penicillin-binding protein PBP2B -
  HMPREF0837_RS09170 (HMPREF0837_11916) - 1757229..1758080 (+) 852 WP_000360345.1 MurR/RpiR family transcriptional regulator -
  HMPREF0837_RS09175 (HMPREF0837_11917) - 1758096..1758980 (-) 885 WP_000222979.1 ROK family protein -
  HMPREF0837_RS09180 (HMPREF0837_11918) - 1758998..1759915 (-) 918 WP_001281530.1 dihydrodipicolinate synthase family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21740.93 Da        Isoelectric Point: 4.4995

>NTDB_id=32711 HMPREF0837_RS09160 WP_000966740.1 1754389..1754985(-) (recR) [Streptococcus pneumoniae TCH8431/19A]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMPDDDVNEFAKNLLAAKRELTYCSICGRLTDEDPCSICTDPTRDQT
TILVLEDSRDVAAMENIQEYHGLYHVLHGLISPMNGISPDDINLKSLMTRLMDSEVSEVIVATNATADGEATSMYLSRLL
KPAGIKVTRLARGLAVGADIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=32711 HMPREF0837_RS09160 WP_000966740.1 1754389..1754985(-) (recR) [Streptococcus pneumoniae TCH8431/19A]
ATGCTTTATCCAACACCTATTGCTAAGTTGATTGACAGTTATTCCAAACTTCCTGGTATTGGGATTAAGACAGCAACTCG
ACTGGCCTTTTATACTATTGGAATGCCGGATGACGACGTCAATGAATTTGCAAAAAATCTTCTTGCAGCCAAGCGAGAAT
TGACCTATTGCTCTATTTGTGGACGATTAACAGATGAAGACCCGTGCTCTATCTGTACCGATCCGACTCGTGACCAGACA
ACGATTTTAGTTCTCGAAGATAGTCGCGATGTGGCAGCCATGGAGAATATCCAAGAATACCATGGACTCTATCATGTCCT
GCATGGCCTCATTTCTCCTATGAATGGTATCAGTCCAGACGATATCAATCTCAAGAGTCTCATGACTCGTCTGATGGATA
GTGAAGTTTCAGAAGTAATCGTAGCAACCAATGCTACAGCAGATGGGGAAGCGACTTCCATGTATCTTTCCCGCTTACTC
AAGCCAGCTGGGATTAAGGTCACTCGCCTGGCACGAGGCCTCGCTGTGGGAGCAGATATCGAGTATGCGGACGAAGTGAC
ACTCTTACGAGCGATTGAAAATCGGACAGAGTTGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

97.98

100

0.98
  recR Bacillus subtilis subsp. subtilis str. 168

62.121

100

0.621
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.744

98.485

0.49

Multiple sequence alignment