Detailed information    

insolico Bioinformatically predicted

Overview


Name   braR   Type   Regulator
Locus tag   HMPREF0837_RS08950 Genome accession   NC_014251
Coordinates   1715195..1715872 (-) Length   225 a.a.
NCBI ID   WP_000548959.1    Uniprot ID   Q9S1K2
Organism   Streptococcus pneumoniae TCH8431/19A     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 1710195..1720872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF0837_RS08920 (HMPREF0837_11866) - 1710358..1710987 (-) 630 WP_000762091.1 NAD(P)-dependent oxidoreductase -
  HMPREF0837_RS08925 (HMPREF0837_11868) - 1711225..1711425 (+) 201 WP_001814296.1 hypothetical protein -
  HMPREF0837_RS08930 (HMPREF0837_11869) - 1711855..1711995 (+) 141 WP_000422775.1 MazG-like protein -
  HMPREF0837_RS08935 (HMPREF0837_11870) - 1712002..1712178 (+) 177 WP_000166031.1 MazG-like protein -
  HMPREF0837_RS08940 (HMPREF0837_11871) thrS 1712236..1714179 (+) 1944 WP_000608349.1 threonine--tRNA ligase -
  HMPREF0837_RS08945 (HMPREF0837_11872) - 1714228..1715202 (-) 975 WP_000887953.1 HAMP domain-containing histidine kinase -
  HMPREF0837_RS08950 (HMPREF0837_11873) braR 1715195..1715872 (-) 678 WP_000548959.1 response regulator transcription factor Regulator
  HMPREF0837_RS08955 (HMPREF0837_11874) - 1716028..1717101 (+) 1074 WP_001273823.1 DUF2974 domain-containing protein -
  HMPREF0837_RS08960 (HMPREF0837_11875) - 1717192..1717494 (-) 303 WP_000281609.1 hypothetical protein -
  HMPREF0837_RS08965 (HMPREF0837_11876) - 1717562..1717999 (-) 438 WP_001166785.1 Rrf2 family transcriptional regulator -
  HMPREF0837_RS08970 (HMPREF0837_11877) - 1718075..1718917 (-) 843 WP_000160938.1 metallophosphoesterase -
  HMPREF0837_RS08975 (HMPREF0837_11878) - 1719029..1719679 (+) 651 WP_000188505.1 metal-dependent transcriptional regulator -
  HMPREF0837_RS13375 (HMPREF0837_11879) - 1719660..1719851 (+) 192 WP_001816503.1 hypothetical protein -
  HMPREF0837_RS08985 (HMPREF0837_11880) - 1719877..1720552 (+) 676 Protein_1714 nicotinamide mononucleotide transporter -
  HMPREF0837_RS13445 - 1720654..1720725 (+) 72 Protein_1715 glutamine ABC transporter permease -

Sequence


Protein


Download         Length: 225 a.a.        Molecular weight: 25964.16 Da        Isoelectric Point: 5.1362

>NTDB_id=32709 HMPREF0837_RS08950 WP_000548959.1 1715195..1715872(-) (braR) [Streptococcus pneumoniae TCH8431/19A]
MHKILLIEDDQVIRQQIGKMLSEWGFEVVLVEDFMEVLSLFVQSEPHLVLMDIGLPLFNGYHWCQEIRKISKVPIMFLSS
RDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYEFGRDESLLEYAGVILNTKSMDLHYQGQVLNLTKNEFQIL
RVLFEHAGNIVARDDLMRELWNSDFFIDDNTLSVNVARLRKKLEEQGLVGFIETKKGIGYGLKHA

Nucleotide


Download         Length: 678 bp        

>NTDB_id=32709 HMPREF0837_RS08950 WP_000548959.1 1715195..1715872(-) (braR) [Streptococcus pneumoniae TCH8431/19A]
ATGCACAAGATTTTATTAATAGAAGATGATCAGGTCATTCGTCAACAGATTGGGAAAATGCTCTCTGAATGGGGATTTGA
AGTGGTCCTGGTAGAAGACTTTATGGAAGTTTTGAGTCTATTTGTTCAGTCGGAACCTCATCTGGTCCTCATGGATATTG
GTTTGCCCTTGTTTAATGGTTATCACTGGTGTCAGGAAATCCGCAAGATTTCCAAGGTACCTATCATGTTTCTTTCTTCG
AGAGACCAGGCTATGGATATTGTCATGGCAATCAATATGGGGGCGGATGACTTTGTGACCAAGCCTTTTGACCAGCAGGT
TCTTTTAGCTAAGGTTCAGGGCTTGTTGCGTCGTTCCTATGAGTTTGGGCGTGATGAGAGTTTGCTGGAATATGCTGGTG
TTATCCTCAATACCAAATCCATGGATTTACATTATCAAGGGCAAGTCTTGAATTTGACCAAGAATGAATTCCAGATTTTA
CGCGTGTTATTTGAGCATGCAGGCAACATCGTAGCACGTGACGACCTGATGCGGGAACTTTGGAACAGTGACTTTTTCAT
TGATGATAATACCCTCTCTGTCAATGTGGCTCGTTTGCGTAAAAAGTTGGAGGAGCAGGGATTGGTAGGATTTATCGAGA
CCAAGAAAGGAATAGGGTACGGATTGAAGCATGCTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q9S1K2

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

48.624

96.889

0.471

  vicR Streptococcus mutans UA159

35.319

100

0.369