Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   FNL98_RS08745 Genome accession   NZ_CP041585
Coordinates   1505872..1506483 (-) Length   203 a.a.
NCBI ID   WP_003687918.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ1711654     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1500872..1511483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNL98_RS08715 (FNL98_08715) yaaA 1501342..1502121 (-) 780 WP_003706583.1 peroxide stress protein YaaA -
  FNL98_RS08720 (FNL98_08720) dapC 1502432..1503619 (-) 1188 WP_047949582.1 succinyldiaminopimelate transaminase -
  FNL98_RS08725 (FNL98_08725) dut 1503697..1504149 (-) 453 WP_103195211.1 dUTP diphosphatase -
  FNL98_RS08730 (FNL98_08730) - 1504315..1505022 (+) 708 Protein_1509 AzlC family ABC transporter permease -
  FNL98_RS08735 (FNL98_08735) - 1505019..1505327 (+) 309 WP_010951048.1 AzlD family protein -
  FNL98_RS08740 (FNL98_08740) pilL 1505397..1505870 (-) 474 WP_025455870.1 PilX family type IV pilin Machinery gene
  FNL98_RS08745 (FNL98_08745) pilK 1505872..1506483 (-) 612 WP_003687918.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  FNL98_RS08750 (FNL98_08750) pilJ 1506462..1507442 (-) 981 WP_010951046.1 PilW family protein Machinery gene
  FNL98_RS08755 (FNL98_08755) pilV 1507439..1508050 (-) 612 WP_050169631.1 type IV pilus modification protein PilV Regulator
  FNL98_RS08760 (FNL98_08760) pilH 1508082..1508747 (-) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  FNL98_RS08765 (FNL98_08765) dnaB 1508902..1510308 (-) 1407 WP_047917169.1 replicative DNA helicase -
  FNL98_RS08775 (FNL98_08775) - 1510472..1511053 (+) 582 WP_047923823.1 superoxide dismutase -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22153.94 Da        Isoelectric Point: 5.3780

>NTDB_id=326964 FNL98_RS08745 WP_003687918.1 1505872..1506483(-) (pilK) [Neisseria gonorrhoeae strain NJ1711654]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCEKGLCTAVNVRTNNNGNEEVFGNIVVQGTPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYEKGTGNVSKMP
RYIIEYLGEKNNQNIYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=326964 FNL98_RS08745 WP_003687918.1 1505872..1506483(-) (pilK) [Neisseria gonorrhoeae strain NJ1711654]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGCCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAA
TGAAGAGGTTTTTGGCAATATCGTGGTGCAAGGCACGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATGAGAAAGGTACGGGAAACGTCAGCAAAATGCCG
CGTTATATTATCGAATATTTGGGCGAGAAGAATAACCAAAATATTTACAGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTGCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

100

100

1

Multiple sequence alignment