Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FNP79_RS18460 Genome accession   NZ_CP041448
Coordinates   3644731..3645468 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain YPE10     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3639731..3650468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNP79_RS18445 (FNP79_18450) clpC 3640185..3642758 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  FNP79_RS18450 (FNP79_18455) yfiH 3642888..3643619 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  FNP79_RS18455 (FNP79_18460) rluD 3643616..3644596 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FNP79_RS18460 (FNP79_18465) comL 3644731..3645468 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  FNP79_RS18465 (FNP79_18470) raiA 3645739..3646080 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  FNP79_RS18470 (FNP79_18475) - 3646308..3647411 (+) 1104 WP_165369007.1 acyltransferase -
  FNP79_RS18475 (FNP79_18480) - 3647898..3648269 (-) 372 Protein_3513 hypothetical protein -
  FNP79_RS18480 (FNP79_18485) - 3648266..3648595 (-) 330 WP_032292401.1 DUF2590 family protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=326773 FNP79_RS18460 WP_000197686.1 3644731..3645468(+) (comL) [Escherichia coli strain YPE10]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=326773 FNP79_RS18460 WP_000197686.1 3644731..3645468(+) (comL) [Escherichia coli strain YPE10]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376