Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   FNP79_RS14345 Genome accession   NZ_CP041448
Coordinates   2839609..2840265 (-) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain YPE10     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2834609..2845265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNP79_RS14310 (FNP79_14315) - 2835742..2836481 (+) 740 Protein_2713 hypothetical protein -
  FNP79_RS14335 (FNP79_14340) pgsA 2837175..2837723 (-) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FNP79_RS14340 (FNP79_14345) uvrC 2837780..2839612 (-) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  FNP79_RS14345 (FNP79_14350) letA 2839609..2840265 (-) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  FNP79_RS26245 (FNP79_14355) - 2840407..2840523 (+) 117 WP_071889271.1 transcriptional regulator -
  FNP79_RS14355 (FNP79_14360) - 2840658..2841355 (+) 698 WP_223367350.1 IS1 family transposase -
  FNP79_RS14360 (FNP79_14365) yecU 2841373..2841513 (+) 141 Protein_2719 protein YecU -
  FNP79_RS14365 (FNP79_14370) yecF 2841500..2841724 (+) 225 WP_000106474.1 DUF2594 family protein YecF -
  FNP79_RS14370 (FNP79_14375) sdiA 2841792..2842514 (-) 723 WP_001154273.1 transcriptional regulator SdiA -
  FNP79_RS14375 (FNP79_14380) tcyN 2842744..2843496 (-) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  FNP79_RS14380 (FNP79_14385) tcyL 2843493..2844161 (-) 669 WP_001158220.1 cystine ABC transporter permease -
  FNP79_RS14385 (FNP79_14390) dcyD 2844176..2845162 (-) 987 WP_001128215.1 D-cysteine desulfhydrase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=326760 FNP79_RS14345 WP_000611335.1 2839609..2840265(-) (letA) [Escherichia coli strain YPE10]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=326760 FNP79_RS14345 WP_000611335.1 2839609..2840265(-) (letA) [Escherichia coli strain YPE10]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACTTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486

Multiple sequence alignment