Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EGU21_RS02365 Genome accession   NZ_CP033885
Coordinates   508309..508875 (+) Length   188 a.a.
NCBI ID   WP_011666823.1    Uniprot ID   M5ABA8
Organism   Levilactobacillus brevis strain LMT1-73     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 503309..513875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGU21_RS02355 gyrA 504785..507319 (+) 2535 WP_011666821.1 DNA gyrase subunit A -
  EGU21_RS02360 rpsF 507979..508275 (+) 297 WP_011666822.1 30S ribosomal protein S6 -
  EGU21_RS02365 ssb 508309..508875 (+) 567 WP_011666823.1 single-stranded DNA-binding protein Machinery gene
  EGU21_RS02370 rpsR 508904..509140 (+) 237 WP_011666824.1 30S ribosomal protein S18 -
  EGU21_RS02375 - 509285..510472 (-) 1188 WP_039106505.1 metal-dependent hydrolase family protein -
  EGU21_RS02380 - 510503..512110 (-) 1608 WP_039106512.1 peptide ABC transporter substrate-binding protein -
  EGU21_RS02385 - 512719..513495 (+) 777 WP_039106515.1 hypothetical protein -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20513.13 Da        Isoelectric Point: 4.7381

>NTDB_id=326760 EGU21_RS02365 WP_011666823.1 508309..508875(+) (ssb) [Levilactobacillus brevis strain LMT1-73]
MINRVVLTGRLTRDVDLRYTQGGAAVATFTLAVDRRFTNQQGEREADFVSCVIWRKSAENFANFFHKGSLVGIEGRIQTR
NYENQQGQRVYVTEVVVENFSFLEPRSRNENNGGGNYNGGSMNNNAPQNQNQNANPYTSGNPAPAAPSQGMAPNSGSNNQ
NSNANNNAADPFANSGDSIDISDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=326760 EGU21_RS02365 WP_011666823.1 508309..508875(+) (ssb) [Levilactobacillus brevis strain LMT1-73]
ATGATCAACCGAGTAGTACTTACTGGCCGACTAACACGGGATGTTGACTTACGCTACACCCAAGGCGGTGCTGCTGTAGC
CACCTTCACGCTGGCCGTTGATCGGCGGTTCACCAACCAACAAGGTGAACGAGAAGCTGATTTCGTAAGTTGCGTCATTT
GGCGCAAGTCCGCGGAAAACTTTGCCAACTTCTTCCACAAGGGTTCCCTTGTCGGTATTGAAGGGCGCATCCAGACCCGG
AATTACGAAAATCAACAGGGCCAACGGGTTTACGTCACCGAAGTGGTTGTCGAGAACTTTTCGTTCTTGGAACCCCGTTC
TCGTAACGAGAACAACGGTGGTGGAAACTACAATGGCGGCTCCATGAATAATAATGCTCCTCAAAATCAGAATCAAAATG
CCAATCCATACACGAGTGGGAATCCAGCTCCGGCTGCGCCTTCTCAAGGTATGGCCCCGAATTCTGGAAGTAACAATCAG
AACAGTAATGCGAACAACAATGCAGCTGATCCGTTTGCCAATTCTGGCGATTCCATTGACATTTCCGATGATGATTTACC
GTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M5ABA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.702

100

0.617
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.143

100

0.574

Multiple sequence alignment