Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   EGM96_RS04535 Genome accession   NZ_CP033876
Coordinates   963375..964010 (-) Length   211 a.a.
NCBI ID   WP_031961350.1    Uniprot ID   A0A836M0W8
Organism   Acinetobacter baumannii strain WU_164     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 958375..969010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGM96_RS04500 (EGM96_04515) mlaE 958711..959487 (+) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  EGM96_RS04505 (EGM96_04520) - 959487..960167 (+) 681 WP_031961351.1 outer membrane lipid asymmetry maintenance protein MlaD -
  EGM96_RS04510 (EGM96_04525) - 960194..960835 (+) 642 WP_001093907.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  EGM96_RS04515 (EGM96_04530) - 960847..961134 (+) 288 WP_000250997.1 STAS domain-containing protein -
  EGM96_RS04520 (EGM96_04535) - 961204..962217 (-) 1014 WP_000888321.1 CorA family divalent cation transporter -
  EGM96_RS04525 (EGM96_04540) - 962375..962956 (+) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  EGM96_RS04530 (EGM96_04545) - 962971..963372 (+) 402 WP_000849705.1 NUDIX hydrolase -
  EGM96_RS04535 (EGM96_04550) comF 963375..964010 (-) 636 WP_031961350.1 ComF family protein Machinery gene
  EGM96_RS04540 (EGM96_04555) recG 964003..966048 (-) 2046 WP_016686247.1 ATP-dependent DNA helicase RecG -
  EGM96_RS04545 (EGM96_04560) - 966069..966884 (+) 816 WP_000547774.1 NAD-dependent epimerase/dehydratase family protein -
  EGM96_RS04550 (EGM96_04565) adeT2 966964..967950 (+) 987 WP_024436494.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24601.73 Da        Isoelectric Point: 9.7140

>NTDB_id=326718 EGM96_RS04535 WP_031961350.1 963375..964010(-) (comF) [Acinetobacter baumannii strain WU_164]
MFKFLNPQYLFHLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALNQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=326718 EGM96_RS04535 WP_031961350.1 963375..964010(-) (comF) [Acinetobacter baumannii strain WU_164]
ATGTTTAAGTTTTTAAACCCCCAGTATCTTTTTCATTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGCCACTACGCCTATCCAATTAACCGGATCATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCCAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACCCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTGAA
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A836M0W8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

99.052

100

0.991
  comF Acinetobacter baumannii D1279779

98.104

100

0.981

Multiple sequence alignment