Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | EGM95_RS12005 | Genome accession | NZ_CP033869 |
| Coordinates | 2443251..2443631 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain MRSN15313 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2438251..2448631
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGM95_RS11975 (EGM95_11975) | tadA | 2438369..2438872 (-) | 504 | WP_000033177.1 | tRNA adenosine(34) deaminase TadA | - |
| EGM95_RS11980 (EGM95_11980) | - | 2438879..2440003 (-) | 1125 | WP_086241960.1 | enoyl-CoA hydratase/isomerase family protein | - |
| EGM95_RS11985 (EGM95_11985) | ung | 2440000..2440713 (-) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| EGM95_RS11990 (EGM95_11990) | - | 2440764..2441360 (-) | 597 | WP_000908453.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| EGM95_RS11995 (EGM95_11995) | gspK | 2441591..2442550 (-) | 960 | WP_000301471.1 | type II secretion system minor pseudopilin GspK | - |
| EGM95_RS12000 (EGM95_12000) | xcpW | 2442550..2443251 (-) | 702 | WP_000594590.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| EGM95_RS12005 (EGM95_12005) | xcpV | 2443251..2443631 (-) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| EGM95_RS12010 (EGM95_12010) | - | 2443621..2444175 (-) | 555 | WP_000841373.1 | type II secretion system protein | - |
| EGM95_RS12015 (EGM95_12015) | - | 2444185..2444793 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| EGM95_RS12020 (EGM95_12020) | - | 2444831..2445604 (-) | 774 | WP_000497301.1 | TatD family hydrolase | - |
| EGM95_RS12025 (EGM95_12025) | - | 2445622..2445963 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| EGM95_RS12030 (EGM95_12030) | - | 2445975..2446955 (-) | 981 | WP_001075416.1 | DNA polymerase III subunit delta' | - |
| EGM95_RS12035 (EGM95_12035) | kdsB | 2446967..2447728 (-) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=326663 EGM95_RS12005 WP_000836911.1 2443251..2443631(-) (xcpV) [Acinetobacter baumannii strain MRSN15313]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=326663 EGM95_RS12005 WP_000836911.1 2443251..2443631(-) (xcpV) [Acinetobacter baumannii strain MRSN15313]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |