Detailed information NTG0326662

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: EGM95_RS12000
• Genome accession: NZ_CP033869
• Coordinates: 2442550..2443251 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594590.1
• Uniprot ID: A0A427R546
• Organism: Acinetobacter baumannii strain MRSN15313
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2437550..2448251

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EGM95_RS11970 (EGM95_11970)	-	2437856..2438299 (-)	444	WP_001246674.1	SRPBCC family protein	-
EGM95_RS11975 (EGM95_11975)	tadA	2438369..2438872 (-)	504	WP_000033177.1	tRNA adenosine(34) deaminase TadA	-
EGM95_RS11980 (EGM95_11980)	-	2438879..2440003 (-)	1125	WP_086241960.1	enoyl-CoA hydratase/isomerase family protein	-
EGM95_RS11985 (EGM95_11985)	ung	2440000..2440713 (-)	714	WP_001177528.1	uracil-DNA glycosylase	-
EGM95_RS11990 (EGM95_11990)	-	2440764..2441360 (-)	597	WP_000908453.1	6-pyruvoyl trahydropterin synthase family protein	-
EGM95_RS11995 (EGM95_11995)	gspK	2441591..2442550 (-)	960	WP_000301471.1	type II secretion system minor pseudopilin GspK	-
EGM95_RS12000 (EGM95_12000)	xcpW	2442550..2443251 (-)	702	WP_000594590.1	type II secretion system minor pseudopilin GspJ	Machinery gene
EGM95_RS12005 (EGM95_12005)	xcpV	2443251..2443631 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
EGM95_RS12010 (EGM95_12010)	-	2443621..2444175 (-)	555	WP_000841373.1	type II secretion system protein	-
EGM95_RS12015 (EGM95_12015)	-	2444185..2444793 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
EGM95_RS12020 (EGM95_12020)	-	2444831..2445604 (-)	774	WP_000497301.1	TatD family hydrolase	-
EGM95_RS12025 (EGM95_12025)	-	2445622..2445963 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
EGM95_RS12030 (EGM95_12030)	-	2445975..2446955 (-)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
EGM95_RS12035 (EGM95_12035)	kdsB	2446967..2447728 (-)	762	WP_000680697.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26627.52 Da
• Isoelectric Point: 9.3468

>NTDB_id=326662 EGM95_RS12000 WP_000594590.1 2442550..2443251(-) (xcpW) [Acinetobacter baumannii strain MRSN15313]
MIKNKYIHIRSIDSRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWTYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=326662 EGM95_RS12000 WP_000594590.1 2442550..2443251(-) (xcpW) [Acinetobacter baumannii strain MRSN15313]
ATGATAAAAAATAAATATATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGACTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

3D structure

• AlphaFold DB: A0A427R546

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991