Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SPN23F_RS02425 Genome accession   NC_011900
Coordinates   461849..462580 (+) Length   243 a.a.
NCBI ID   WP_000889923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae ATCC 700669     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 456849..467580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPN23F_RS02400 (SPN23F04690) - 458422..458778 (+) 357 WP_000114427.1 hypothetical protein -
  SPN23F_RS02405 (SPN23F04700) dnaJ 459180..460316 (+) 1137 WP_001066295.1 molecular chaperone DnaJ -
  SPN23F_RS13365 (SPN23F04710) - 460628..460912 (-) 285 WP_025169639.1 hypothetical protein -
  SPN23F_RS02415 (SPN23F04720) - 461074..461361 (-) 288 WP_000777753.1 hypothetical protein -
  SPN23F_RS02420 (SPN23F04730) - 461371..461781 (-) 411 WP_001278301.1 HIT family protein -
  SPN23F_RS02425 (SPN23F04740) pptA 461849..462580 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  SPN23F_RS02430 (SPN23F04750) - 462577..463626 (+) 1050 WP_000653774.1 ABC transporter permease -
  SPN23F_RS02435 (SPN23F04760) - 463794..464123 (-) 330 WP_000132572.1 hypothetical protein -
  SPN23F_RS02440 (SPN23F04770) - 464399..464737 (+) 339 WP_000876675.1 LytTR family DNA-binding domain-containing protein -
  SPN23F_RS02445 (SPN23F04780) comE/blpR 464742..465479 (+) 738 WP_001219120.1 response regulator transcription factor Regulator
  SPN23F_RS02450 (SPN23F04790) - 465493..466833 (+) 1341 WP_001017642.1 sensor histidine kinase -
  SPN23F_RS02455 (SPN23F04791) blpC 466904..467032 (-) 129 WP_000358815.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7792

>NTDB_id=32665 SPN23F_RS02425 WP_000889923.1 461849..462580(+) (pptA) [Streptococcus pneumoniae ATCC 700669]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=32665 SPN23F_RS02425 WP_000889923.1 461849..462580(+) (pptA) [Streptococcus pneumoniae ATCC 700669]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTCCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708

Multiple sequence alignment