Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   EG365_RS06455 Genome accession   NZ_CP033866
Coordinates   1326457..1326930 (-) Length   157 a.a.
NCBI ID   WP_001214061.1    Uniprot ID   A0A219CC01
Organism   Acinetobacter sp. FDAARGOS_494     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1321457..1331930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG365_RS06440 (EG365_06445) pilX 1324086..1324904 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  EG365_RS06445 (EG365_06450) pilW 1324901..1325902 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  EG365_RS06450 (EG365_06455) pilV 1325903..1326463 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  EG365_RS06455 (EG365_06460) fimU 1326457..1326930 (-) 474 WP_001214061.1 pilus assembly FimT family protein Machinery gene
  EG365_RS06460 (EG365_06465) ispH 1327100..1328050 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  EG365_RS06465 (EG365_06470) gmk 1328173..1328802 (+) 630 WP_000015937.1 guanylate kinase -
  EG365_RS06470 (EG365_06475) rpoZ 1328875..1329153 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  EG365_RS06475 (EG365_06480) - 1329192..1329321 (+) 130 Protein_1256 hypothetical protein -
  EG365_RS06480 (EG365_06485) - 1329361..1331466 (+) 2106 WP_001117590.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16836.40 Da        Isoelectric Point: 8.5355

>NTDB_id=326599 EG365_RS06455 WP_001214061.1 1326457..1326930(-) (fimU) [Acinetobacter sp. FDAARGOS_494]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILSKLGTLVFKAEENC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=326599 EG365_RS06455 WP_001214061.1 1326457..1326930(-) (fimU) [Acinetobacter sp. FDAARGOS_494]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACTACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGTCCAAGCTTGGCACTTTGGTTTTTAAGGCCGAGGAGAATTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-147)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A219CC01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987

Multiple sequence alignment