Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   EG364_RS16755 Genome accession   NZ_CP033862
Coordinates   3390483..3390956 (-) Length   157 a.a.
NCBI ID   WP_001214061.1    Uniprot ID   A0A219CC01
Organism   Acinetobacter sp. FDAARGOS_560     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3385483..3395956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG364_RS16740 (EG364_16745) pilX 3388112..3388930 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  EG364_RS16745 (EG364_16750) pilW 3388927..3389928 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  EG364_RS16750 (EG364_16755) pilV 3389929..3390489 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  EG364_RS16755 (EG364_16760) fimU 3390483..3390956 (-) 474 WP_001214061.1 pilus assembly FimT family protein Machinery gene
  EG364_RS16760 (EG364_16765) ispH 3391126..3392076 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  EG364_RS16765 (EG364_16770) gmk 3392199..3392828 (+) 630 WP_000015937.1 guanylate kinase -
  EG364_RS16770 (EG364_16775) rpoZ 3392901..3393179 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  EG364_RS16775 (EG364_16780) - 3393218..3393347 (+) 130 Protein_3259 hypothetical protein -
  EG364_RS16780 (EG364_16785) - 3393387..3395492 (+) 2106 WP_001117590.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16836.40 Da        Isoelectric Point: 8.5355

>NTDB_id=326524 EG364_RS16755 WP_001214061.1 3390483..3390956(-) (fimU) [Acinetobacter sp. FDAARGOS_560]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILSKLGTLVFKAEENC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=326524 EG364_RS16755 WP_001214061.1 3390483..3390956(-) (fimU) [Acinetobacter sp. FDAARGOS_560]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACTACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGTCCAAGCTTGGCACTTTGGTTTTTAAGGCCGAGGAGAATTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-147)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A219CC01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987

Multiple sequence alignment