Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   EG364_RS16740 Genome accession   NZ_CP033862
Coordinates   3388112..3388930 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter sp. FDAARGOS_560     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3383112..3393930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG364_RS16725 (EG364_16730) pilE 3383329..3383754 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  EG364_RS16730 (EG364_16735) pilY2 3383751..3384233 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  EG364_RS16735 (EG364_16740) pilY1 3384246..3388100 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  EG364_RS16740 (EG364_16745) pilX 3388112..3388930 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  EG364_RS16745 (EG364_16750) pilW 3388927..3389928 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  EG364_RS16750 (EG364_16755) pilV 3389929..3390489 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  EG364_RS16755 (EG364_16760) fimU 3390483..3390956 (-) 474 WP_001214061.1 pilus assembly FimT family protein Machinery gene
  EG364_RS16760 (EG364_16765) ispH 3391126..3392076 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  EG364_RS16765 (EG364_16770) gmk 3392199..3392828 (+) 630 WP_000015937.1 guanylate kinase -
  EG364_RS16770 (EG364_16775) rpoZ 3392901..3393179 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  EG364_RS16775 (EG364_16780) - 3393218..3393347 (+) 130 Protein_3259 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=326521 EG364_RS16740 WP_000149374.1 3388112..3388930(-) (pilX) [Acinetobacter sp. FDAARGOS_560]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=326521 EG364_RS16740 WP_000149374.1 3388112..3388930(-) (pilX) [Acinetobacter sp. FDAARGOS_560]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment