Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FNE81_RS05900 Genome accession   NZ_CP041435
Coordinates   1223604..1224341 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain STEC309     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1218604..1229341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNE81_RS05870 (FNE81_06005) yfiL 1218762..1219127 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  FNE81_RS05875 (FNE81_06010) aroF 1219337..1220407 (+) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  FNE81_RS05880 (FNE81_06015) tyrA 1220418..1221539 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  FNE81_RS05885 (FNE81_06020) pheA 1221582..1222742 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  FNE81_RS05890 (FNE81_06025) pheL 1222841..1222888 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  FNE81_RS05895 (FNE81_06030) raiA 1222992..1223333 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  FNE81_RS05900 (FNE81_06035) comL 1223604..1224341 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  FNE81_RS05905 (FNE81_06040) rluD 1224476..1225456 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FNE81_RS05910 (FNE81_06045) yfiH 1225453..1226184 (+) 732 WP_000040149.1 purine nucleoside phosphorylase YfiH -
  FNE81_RS05915 (FNE81_06050) clpC 1226314..1228887 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=326510 FNE81_RS05900 WP_000197686.1 1223604..1224341(-) (comL) [Escherichia coli strain STEC309]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=326510 FNE81_RS05900 WP_000197686.1 1223604..1224341(-) (comL) [Escherichia coli strain STEC309]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment