Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   EGY13_RS03015 Genome accession   NZ_CP033858
Coordinates   521104..521631 (+) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter sp. FDAARGOS_493     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 516104..526631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGY13_RS03000 (EGY13_03000) pilM 518657..519715 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  EGY13_RS03005 (EGY13_03005) pilN 519715..520356 (+) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  EGY13_RS03010 (EGY13_03010) pilO 520353..521093 (+) 741 WP_000076102.1 type 4a pilus biogenesis protein PilO Machinery gene
  EGY13_RS03015 (EGY13_03015) pilP 521104..521631 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  EGY13_RS03020 (EGY13_03020) pilQ 521693..523858 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  EGY13_RS03025 (EGY13_03025) aroK 523870..524439 (+) 570 WP_000643712.1 shikimate kinase AroK -
  EGY13_RS03030 (EGY13_03030) aroB 524468..525550 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -
  EGY13_RS03035 (EGY13_03035) - 525566..526441 (+) 876 WP_000218799.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=326443 EGY13_RS03015 WP_000695065.1 521104..521631(+) (pilP) [Acinetobacter sp. FDAARGOS_493]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=326443 EGY13_RS03015 WP_000695065.1 521104..521631(+) (pilP) [Acinetobacter sp. FDAARGOS_493]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTTGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCAGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTCGAAAGGCCAAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714

Multiple sequence alignment