Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FNE82_RS06260 Genome accession   NZ_CP041433
Coordinates   1275158..1275895 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain STEC313     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1270158..1280895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNE82_RS06240 (FNE82_06345) - 1272619..1272759 (+) 141 WP_032218680.1 Hok/Gef family protein -
  FNE82_RS25380 (FNE82_06350) - 1272907..1273293 (-) 387 WP_130259648.1 hypothetical protein -
  FNE82_RS06245 (FNE82_06355) - 1273446..1273643 (+) 198 WP_077900366.1 Com family DNA-binding transcriptional regulator -
  FNE82_RS06250 (FNE82_06360) - 1273588..1274394 (+) 807 WP_074523819.1 site-specific DNA-methyltransferase -
  FNE82_RS06255 (FNE82_06365) raiA 1274546..1274887 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  FNE82_RS06260 (FNE82_06370) comL 1275158..1275895 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  FNE82_RS06265 (FNE82_06375) rluD 1276030..1277010 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FNE82_RS06270 (FNE82_06380) yfiH 1277007..1277738 (+) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  FNE82_RS06275 (FNE82_06385) clpC 1277868..1280441 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=326430 FNE82_RS06260 WP_000197686.1 1275158..1275895(-) (comL) [Escherichia coli strain STEC313]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=326430 FNE82_RS06260 WP_000197686.1 1275158..1275895(-) (comL) [Escherichia coli strain STEC313]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376