Detailed information NTG0032642

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: HMPREF0837_RS01225
• Genome accession: NC_014251
• Coordinates: 230233..231330 (+)
• Length: 365 a.a.
• NCBI ID: WP_000266662.1
• Uniprot ID: Q8DMX3
• Organism: Streptococcus pneumoniae TCH8431/19A
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 225233..236330

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HMPREF0837_RS01200 (HMPREF0837_10236)	pgsA	225754..226299 (-)	546	WP_000712136.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
HMPREF0837_RS01205 (HMPREF0837_10237)	rodZ	226310..227131 (-)	822	WP_001227958.1	cytoskeleton protein RodZ	-
HMPREF0837_RS01210 (HMPREF0837_10238)	yfmH	227173..228456 (-)	1284	WP_000170193.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
HMPREF0837_RS01215 (HMPREF0837_10239)	yfmF	228453..229703 (-)	1251	WP_000424257.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
HMPREF0837_RS01220 (HMPREF0837_10240)	yaaA	229862..230230 (+)	369	WP_000455903.1	S4 domain-containing protein YaaA	-
HMPREF0837_RS01225 (HMPREF0837_10241)	recF	230233..231330 (+)	1098	WP_000266662.1	DNA replication/repair protein RecF	Machinery gene
HMPREF0837_RS01230 (HMPREF0837_10242)	guaB	231381..232859 (-)	1479	WP_000073428.1	IMP dehydrogenase	-
HMPREF0837_RS01235 (HMPREF0837_10243)	trpS	233011..234036 (-)	1026	WP_000165444.1	tryptophan--tRNA ligase	-
HMPREF0837_RS01240 (HMPREF0837_10244)	-	234242..235864 (+)	1623	WP_000958770.1	ATP-binding cassette domain-containing protein	-

Sequence

Protein

• Length: 365 a.a.
• Molecular weight: 41916.00 Da
• Isoelectric Point: 9.0596

>NTDB_id=32642 HMPREF0837_RS01225 WP_000266662.1 230233..231330(+) (recF) [Streptococcus pneumoniae TCH8431/19A]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSAQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKASVNGN

Nucleotide

• Length: 1098 bp

>NTDB_id=32642 HMPREF0837_RS01225 WP_000266662.1 230233..231330(+) (recF) [Streptococcus pneumoniae TCH8431/19A]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAACTTGGGCAAATTAAGCCAATCTATTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGCTCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCTATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTTCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q8DMX3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	100	100	1
recF	Bacillus subtilis subsp. subtilis str. 168	45.902	100	0.46